Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS12455	BPHYT_RS12460	BPHYT_RS12465	BPHYT_RS12470	BPHYT_RS12475
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.5	-0.2	-5.3	-0.1	+0.3
carbon source	Putrescine (C)	+0.0	-0.0	-5.2	-0.1	-0.1
nutrient	L-Histidine	-0.1	-0.1	-4.4	+0.0	-0.2
motility	inner cut, LB soft agar motility assay	-0.3	-0.3	-3.5	+0.3	-0.7
temperature	LB, 23C	-0.1	+0.1	-4.4	+0.1	-0.1
carbon source	Azelaic (C)	-0.6	-0.2	-4.0	+0.2	+0.2
carbon source	L-Proline (C)	-0.7	+0.0	-3.6	-0.0	-0.1
supernatant control	Vogels_fungal_media; pH 5.5	-0.1	-0.2	-3.5	-0.0	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	-0.2	-0.2	-3.9	+0.1	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-1.1	-0.3	-2.4	-0.2	-0.2
nutrient	L-Serine	-0.2	-0.0	-3.9	+0.1	-0.1
motility	outer cut, LB soft agar motility assay	-0.4	+0.4	-3.7	-0.0	-0.3
vitamin	With vitamins t2	+0.1	-0.2	-3.7	-0.1	-0.1
vitamin	No vitamins t2	-0.3	-0.0	-3.6	+0.1	+0.1
carbon source	Protocatechuic Acid (C)	-0.3	-0.4	-3.2	+0.0	+0.2
motility	outer cut, LB soft agar motility assay	-0.4	-0.2	-3.5	+0.5	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	-0.4	-3.5	-0.2	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+0.1	-3.6	-0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.2	-3.8	+0.1	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.3	-3.4	+0.2	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.0	+0.5	-3.5	+0.1	+0.2
nitrogen source	Ammonium chloride (N)	+0.4	+0.2	-3.3	+0.1	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	+0.3	-3.1	-0.1	-0.2
tn7 efficiency	Outgrowth after Tn7 transformation	+0.5	+0.3	-3.3	+0.0	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	+0.5	-3.5	-0.0	+0.3
motility	inner cut, LB soft agar motility assay	+0.7	+0.4	-2.9	-0.0	-0.4
stress	Nickel (II) chloride 1 mM	+1.7	+0.2	-3.5	-0.0	-0.1
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.1	-0.4	-2.9	-0.3	+4.4
phage	24hr PHYTO3 MOI 10	+0.8	+0.0	+3.3	-0.4	+0.4
stress	Paraquat dichloride 0.064 mg/ml	+0.2	+0.1	+4.4	+0.0	-0.3