Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS12345 and BPHYT_RS12350 are separated by 155 nucleotidesBPHYT_RS12350 and BPHYT_RS12355 are separated by 122 nucleotidesBPHYT_RS12355 and BPHYT_RS12360 are separated by 406 nucleotidesBPHYT_RS12360 and BPHYT_RS12365 are separated by 127 nucleotides BPHYT_RS12345: BPHYT_RS12345 - tRNA-Glu, at 2,815,388 to 2,815,463 _RS12345 BPHYT_RS12350: BPHYT_RS12350 - tRNA-Ala, at 2,815,619 to 2,815,694 _RS12350 BPHYT_RS12355: BPHYT_RS12355 - glutamate--tRNA ligase, at 2,815,817 to 2,817,226 _RS12355 BPHYT_RS12360: BPHYT_RS12360 - esterase, at 2,817,633 to 2,818,586 _RS12360 BPHYT_RS12365: BPHYT_RS12365 - peptidase P60, at 2,818,714 to 2,819,379 _RS12365
Group Condition BPHYT_RS12345 BPHYT_RS12350 BPHYT_RS12355 BPHYT_RS12360 BPHYT_RS12365
supernatant control Vogels_fungal_media 0.1X N.D. N.D. N.D. -0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.4 N.D.
phage 24hr PHYTO7 MOI 1 N.D. N.D. N.D. -0.4 N.D.
phage 36hr PHYTO6 MOI 0.1 N.D. N.D. N.D. -0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. +0.3 N.D.
nitrogen source Carnitine Hydrochloride (N) N.D. N.D. N.D. +0.3 N.D.
nitrogen source NAG (N) N.D. N.D. N.D. +0.4 N.D.
nophagecontrol 36hr Phyto Lib Only N.D. N.D. N.D. +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. +0.4 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. N.D. N.D. +0.4 N.D.
nitrogen source L-Phenylalanine (N) N.D. N.D. N.D. +0.4 N.D.
phage 36hr PHYTO9 MOI 0.1 N.D. N.D. N.D. +0.4 N.D.
nitrogen source L-Glutamine (N) N.D. N.D. N.D. +0.4 N.D.
nitrogen source Ammonium chloride (N) N.D. N.D. N.D. +0.4 N.D.
phage 24hr PHYTO9 MOI 0.1 N.D. N.D. N.D. +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. +0.4 N.D.
nitrogen source Uridine (N) N.D. N.D. N.D. +0.5 N.D.
nitrogen source L-Serine (N) N.D. N.D. N.D. +0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. +0.5 N.D.
phage 24hr PHYTO10 MOI 1 N.D. N.D. N.D. +0.5 N.D.
lb_dap plate control LB_DAP agar plate, outgrowth in LB N.D. N.D. N.D. +0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. +0.5 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. +0.5 N.D.
nitrogen source L-Asparagine (N) N.D. N.D. N.D. +0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. +0.6 N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 N.D. N.D. N.D. +0.6 N.D.
nitrogen source L-Glutamic (N) N.D. N.D. N.D. +0.8 N.D.
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BPHYT_RS12350
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