Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS12205	BPHYT_RS12210	BPHYT_RS12215	BPHYT_RS12220	BPHYT_RS12225
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.1	-0.6	-0.6	+0.1	-1.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.7	-0.2	+0.1	-0.3	-1.3
phage	36hr PHYTO10 MOI 10	-0.6	-0.1	+0.0	+0.2	-1.5
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.1	-0.5	-0.8	-0.2	-0.4
carbon source	Phenylacetic 5 mM (C)	-0.7	-0.4	-0.5	+0.3	+0.0
supernatant control	Vogels_fungal_media 0.1X	-0.8	+0.1	-0.4	-0.4	+0.3
carbon source	D-Glucose 20 mM (C)	-0.6	-0.0	-0.4	+0.4	-0.4
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	-0.7	-0.3	-0.3	-0.1	+0.5
phage	24hr PHYTO9 MOI 0.1	-0.1	-0.2	+0.5	-0.3	-0.8
carbon source	Phenylacetic 5 mM (C)	-0.9	-0.2	-0.4	+0.4	+0.5
motility	inner cut, LB soft agar motility assay	-0.3	-0.2	+0.4	+0.5	-0.9
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.3	-0.7	+0.8	+0.1	-0.4
phage	36hr PHYTO2 MOI 1	-0.5	-0.6	+0.5	-0.1	+0.3
phage	24hr PHYTO6 MOI 10	+0.2	+0.1	+0.4	+0.1	-1.1
phage	24hr PHYTO11 MOI 1	-0.1	+0.1	+0.5	+0.4	-1.1
nophagecontrol	24hr Phyto Lib only	+0.5	-0.0	+0.6	+0.1	-1.1
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.7	+0.1	-0.2	+0.5
supernatant control	Vogels_fungal_media; pH 5.5	+0.4	-0.7	+0.6	-0.2	-0.0
phage	24hr PHYTO9 MOI 10	+0.2	-0.2	+0.7	+0.3	-0.7
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.5	+0.4	-0.4	+0.7
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.0	+0.2	+0.5	-0.9	+0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+0.1	+0.7	+0.5	-0.4
phage	36hr PHYTO MOI 0.1	-0.6	+0.3	+0.3	+0.3	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.7	+0.1	+0.8	-0.3	-0.1
phage	24hr PHYTO4 MOI 10	+0.5	-0.5	+0.4	+0.4	+0.4
phage	36hr PHYTO3 MOI 1	-0.3	+0.2	+0.4	+0.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.5	+0.0	-0.1	+0.3	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.2	+0.2	-0.3	+0.4	+0.1
phage	36hr PHYTO8 MOI 0.1	+0.6	-0.3	+0.6	-0.0	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.0	+0.2	+0.4	+0.1	+0.4