Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS12135 and BPHYT_RS12140 are separated by 204 nucleotidesBPHYT_RS12140 and BPHYT_RS12145 are separated by 463 nucleotidesBPHYT_RS12145 and BPHYT_RS12150 are separated by 30 nucleotidesBPHYT_RS12150 and BPHYT_RS12155 are separated by 1518 nucleotides BPHYT_RS12135: BPHYT_RS12135 - elongation factor Ts, at 2,765,091 to 2,765,972 _RS12135 BPHYT_RS12140: BPHYT_RS12140 - 30S ribosomal protein S2, at 2,766,177 to 2,766,929 _RS12140 BPHYT_RS12145: BPHYT_RS12145 - methionine aminopeptidase, at 2,767,393 to 2,768,202 _RS12145 BPHYT_RS12150: BPHYT_RS12150 - PII uridylyl-transferase, at 2,768,233 to 2,770,812 _RS12150 BPHYT_RS12155: BPHYT_RS12155 - RNA-binding protein S4, at 2,772,331 to 2,773,083 _RS12155
Group Condition BPHYT_RS12135 BPHYT_RS12140 BPHYT_RS12145 BPHYT_RS12150 BPHYT_RS12155
nitrogen source Carnitine Hydrochloride (N) N.D. N.D. -0.6 -6.5 +0.1
nitrogen source Uridine (N) N.D. N.D. -0.4 -5.9 -0.1
nitrogen source Putrescine (N) N.D. N.D. -0.6 -5.5 -0.1
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 N.D. N.D. -0.5 -5.5 -0.0
nitrogen source L-Proline (N) N.D. N.D. -0.3 -5.7 -0.1
nitrogen source L-Lysine (N) N.D. N.D. -0.6 -4.2 -0.5
nitrogen source NAG (N) N.D. N.D. -0.7 -4.7 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days N.D. N.D. -0.3 -4.4 -0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. -0.3 -3.9 -0.9
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.6 -3.7 -0.0
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.6 -3.6 -0.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.5 -3.0 -0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. -0.4 -3.0 -0.5
nitrogen source L-Phenylalanine (N) N.D. N.D. -0.3 -3.6 +0.1
nitrogen source D-Alanine (N) N.D. N.D. -0.0 -3.7 -0.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. N.D. -0.7 -3.0 -0.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.6 -2.5 -0.6
nitrogen source L-Citrulline (N) N.D. N.D. -0.8 -2.7 -0.3
nitrogen source L-Serine (N) N.D. N.D. -0.6 -3.4 +0.2
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.2 -3.4 -0.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.0 -3.2 -0.4
nitrogen source L-Isoleucine (N) N.D. N.D. -0.3 -3.2 -0.1
nitrogen source L-Alanine (N) N.D. N.D. -0.2 -2.8 -0.4
vitamin With vitamins t2 N.D. N.D. -0.1 -3.5 +0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. -0.2 -2.8 -0.1
vitamin No vitamins t2 N.D. N.D. -0.1 -3.2 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.5 -2.4 +0.3
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. N.D. -1.1 -2.1 +0.5
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. N.D. -0.9 -1.8 +0.4
phage 24hr PHYTO3 MOI 10 N.D. N.D. +0.1 +2.3 -0.8
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