Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS12125 and BPHYT_RS12130 are separated by 100 nucleotidesBPHYT_RS12130 and BPHYT_RS12135 are separated by 219 nucleotidesBPHYT_RS12135 and BPHYT_RS12140 are separated by 204 nucleotidesBPHYT_RS12140 and BPHYT_RS12145 are separated by 463 nucleotides BPHYT_RS12125: BPHYT_RS12125 - ribosome-recycling factor, at 2,763,497 to 2,764,057 _RS12125 BPHYT_RS12130: BPHYT_RS12130 - uridylate kinase, at 2,764,158 to 2,764,871 _RS12130 BPHYT_RS12135: BPHYT_RS12135 - elongation factor Ts, at 2,765,091 to 2,765,972 _RS12135 BPHYT_RS12140: BPHYT_RS12140 - 30S ribosomal protein S2, at 2,766,177 to 2,766,929 _RS12140 BPHYT_RS12145: BPHYT_RS12145 - methionine aminopeptidase, at 2,767,393 to 2,768,202 _RS12145
Group Condition BPHYT_RS12125 BPHYT_RS12130 BPHYT_RS12135 BPHYT_RS12140 BPHYT_RS12145
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. -1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. -1.5
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. N.D. N.D. N.D. -1.1
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. N.D. N.D. N.D. -0.9
nitrogen source L-Citrulline (N) N.D. N.D. N.D. N.D. -0.8
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. N.D. N.D. N.D. -0.7
nitrogen source NAG (N) N.D. N.D. N.D. N.D. -0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.7
nitrogen source L-Lysine (N) N.D. N.D. N.D. N.D. -0.6
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.6
nitrogen source L-Serine (N) N.D. N.D. N.D. N.D. -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.6
nitrogen source Carnitine Hydrochloride (N) N.D. N.D. N.D. N.D. -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.6
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.6
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.6
nitrogen source Putrescine (N) N.D. N.D. N.D. N.D. -0.6
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 N.D. N.D. N.D. N.D. -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.5
phage 24hr PHYTO6 MOI 0.1 N.D. N.D. N.D. N.D. +0.5
phage 36hr PHYTO6 MOI 1 N.D. N.D. N.D. N.D. +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. N.D. +0.5
phage 24hr PHYTO3 MOI 1 N.D. N.D. N.D. N.D. +0.5
phage 36hr PHYTO9 MOI 1 N.D. N.D. N.D. N.D. +0.6
phage 36hr PHYTO4 MOI 1 N.D. N.D. N.D. N.D. +0.6
phage 36hr PHYTO2 MOI 1 N.D. N.D. N.D. N.D. +0.6
carbon source Suberic (C) N.D. N.D. N.D. N.D. +0.7
stress Lomefloxacin 0.001 mM N.D. N.D. N.D. N.D. +0.7
stress Bacitracin 0.25 mg/ml N.D. N.D. N.D. N.D. +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +0.9
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