Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS12055 and BPHYT_RS12060 are separated by 514 nucleotidesBPHYT_RS12060 and BPHYT_RS12065 are separated by 160 nucleotidesBPHYT_RS12065 and BPHYT_RS12070 are separated by 73 nucleotidesBPHYT_RS12070 and BPHYT_RS12075 overlap by 4 nucleotides BPHYT_RS12055: BPHYT_RS12055 - phosphoenolpyruvate synthase, at 2,746,801 to 2,749,206 _RS12055 BPHYT_RS12060: BPHYT_RS12060 - hypothetical protein, at 2,749,721 to 2,750,536 _RS12060 BPHYT_RS12065: BPHYT_RS12065 - RNA methyltransferase, at 2,750,697 to 2,751,482 _RS12065 BPHYT_RS12070: BPHYT_RS12070 - ribonuclease HII, at 2,751,556 to 2,752,302 _RS12070 BPHYT_RS12075: BPHYT_RS12075 - lipid-A-disaccharide synthase, at 2,752,299 to 2,753,468 _RS12075
Group Condition BPHYT_RS12055 BPHYT_RS12060 BPHYT_RS12065 BPHYT_RS12070 BPHYT_RS12075
carbon source Protocatechuic Acid (C) -5.8 -1.2 -0.4 -0.6 N.D.
carbon source D-Lactate (C) -5.9 -1.8 -0.2 +0.1 N.D.
carbon source L-Alanine (C) -6.1 -1.3 +0.0 -0.3 N.D.
carbon source L-Lactate (C) -5.8 -1.8 -0.1 +0.2 N.D.
carbon source D,L-Lactate (C) -5.9 -1.3 -0.4 +0.1 N.D.
carbon source pyruvate (C) -5.7 -1.1 -0.0 -0.2 N.D.
carbon source L-Tryptophan (C) -5.2 -1.3 -0.1 -0.3 N.D.
carbon source Tween 20 (C) -4.1 -2.5 +0.3 -0.5 N.D.
carbon source propionate (C) -4.6 -1.7 -0.1 -0.3 N.D.
carbon source L-Proline (C) -5.5 -0.7 -0.2 -0.0 N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -4.6 -1.3 -0.6 +0.0 N.D.
carbon source L-Glutamine (C) -6.3 -0.2 +0.3 -0.2 N.D.
carbon source L-Rhamnose (C) -5.6 -0.4 -0.2 -0.0 N.D.
carbon source D,L-Lactate (C) -4.9 -1.2 +0.1 -0.0 N.D.
carbon source NAG (C) -5.0 -1.4 +0.3 +0.1 N.D.
carbon source Protocatechuic Acid (C) -4.6 -2.0 +0.3 +0.4 N.D.
carbon source D,L-Lactate (C) -5.2 -1.3 +0.3 +0.3 N.D.
carbon source L-Phenylalanine (C) -5.4 -1.0 +0.1 +0.4 N.D.
carbon source L-Fucose (C) -4.8 -1.3 +0.2 +0.0 N.D.
carbon source D,L-Lactate (C) -5.2 -0.8 +0.2 +0.2 N.D.
carbon source D-Alanine (C) -4.7 -0.4 -0.2 -0.2 N.D.
nitrogen source L-Glutamic (N) -4.7 +0.2 -0.3 -0.3 N.D.
carbon source succinate (C) -4.4 -1.5 +0.7 +0.2 N.D.
carbon source D,L-Lactate (C) -4.8 -0.1 +0.3 -0.3 N.D.
carbon source L-Malic (C) -4.1 -0.6 +0.2 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.2 -2.7 -0.0 +0.5 N.D.
carbon source succinate (C) -4.4 -0.2 -0.1 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.6 -2.6 +0.3 +0.5 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -3.2 +0.5 +0.8 +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -2.8 +3.0 -0.0 -0.2 N.D.
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