Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS11965 and BPHYT_RS11970 are separated by 69 nucleotidesBPHYT_RS11970 and BPHYT_RS11975 are separated by 179 nucleotidesBPHYT_RS11975 and BPHYT_RS11980 are separated by 701 nucleotidesBPHYT_RS11980 and BPHYT_RS11985 are separated by 131 nucleotides BPHYT_RS11965: BPHYT_RS11965 - alkylhydroperoxidase, at 2,723,595 to 2,724,074 _RS11965 BPHYT_RS11970: BPHYT_RS11970 - cupin, at 2,724,144 to 2,724,551 _RS11970 BPHYT_RS11975: BPHYT_RS11975 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 2,724,731 to 2,725,939 _RS11975 BPHYT_RS11980: BPHYT_RS11980 - LysR family transcriptional regulator, at 2,726,641 to 2,727,678 _RS11980 BPHYT_RS11985: BPHYT_RS11985 - hypothetical protein, at 2,727,810 to 2,728,520 _RS11985
Group Condition BPHYT_RS11965 BPHYT_RS11970 BPHYT_RS11975 BPHYT_RS11980 BPHYT_RS11985
nophagecontrol 36hr Phyto Lib Only +0.3 -4.1 +0.7 -1.0 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -0.6 -0.5 -1.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -0.3 -1.3 -1.1 N.D.
phage 36hr PHYTO10 MOI 10 +0.5 -1.7 -0.5 -1.3 N.D.
phage 36hr PHYTO10 MOI 1 +0.5 -2.2 +0.0 -0.7 N.D.
phage 36hr PHYTO9 MOI 0.1 +0.5 -1.9 +0.3 -1.1 N.D.
phage 24hr PHYTO2 MOI 0.1 +0.2 -1.9 -0.5 +0.3 N.D.
phage 36hr PHYTO1 MOI 1 +0.4 -1.7 +0.4 -1.0 N.D.
phage 36hr PHYTO11 MOI 1 +0.4 -2.6 +0.5 -0.1 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.7 -1.9 -0.4 -0.2 N.D.
phage 24hr PHYTO9 MOI 10 +0.4 -0.4 +0.6 -2.2 N.D.
nitrogen source L-Serine (N) +0.0 -1.5 +0.6 -0.7 N.D.
phage 24hr PHYTO2 MOI 0.1 +0.9 -0.9 +0.2 -1.4 N.D.
phage 36hr PHYTO2 MOI 0.1 +0.4 -1.9 +0.2 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.3 +0.6 -1.0 -1.8 N.D.
phage 24hr PHYTO2 MOI 1 +1.0 -0.7 -0.3 -0.9 N.D.
phage 36hr PHYTO3 MOI 1 +0.9 -2.0 +0.0 +0.4 N.D.
nophagecontrol 36hr Phyto Lib only +0.2 -1.7 +0.6 +0.3 N.D.
motility outer cut, LB soft agar motility assay +0.4 -1.8 +0.6 +0.3 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.4 -1.4 -0.3 +0.9 N.D.
phage 36hr PHYTO4 MOI 1 +0.7 -1.6 -0.4 +0.9 N.D.
phage 24hr PHYTO3 MOI 1 +0.6 -1.4 +0.7 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 +0.8 +0.2 -1.8 N.D.
supernatant control Vogels_fungal_media; pH 5.5 -0.4 -1.0 +0.8 +0.8 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.2 +1.4 +0.8 -0.5 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.5 +3.7 -0.9 -0.1 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.3 +3.7 -0.5 -0.0 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +0.9 +1.9 +0.7 +0.8 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.3 +3.8 -0.1 +1.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +3.2 +5.2 -0.2 -0.6 N.D.
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