Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS11950 and BPHYT_RS11955 are separated by 104 nucleotidesBPHYT_RS11955 and BPHYT_RS11960 are separated by 34 nucleotidesBPHYT_RS11960 and BPHYT_RS11965 are separated by 1234 nucleotidesBPHYT_RS11965 and BPHYT_RS11970 are separated by 69 nucleotides BPHYT_RS11950: BPHYT_RS11950 - DSBA oxidoreductase, at 2,717,837 to 2,719,390 _RS11950 BPHYT_RS11955: BPHYT_RS11955 - hemolysin D, at 2,719,495 to 2,720,808 _RS11955 BPHYT_RS11960: BPHYT_RS11960 - MarR family transcriptional regulator, at 2,720,843 to 2,722,360 _RS11960 BPHYT_RS11965: BPHYT_RS11965 - alkylhydroperoxidase, at 2,723,595 to 2,724,074 _RS11965 BPHYT_RS11970: BPHYT_RS11970 - cupin, at 2,724,144 to 2,724,551 _RS11970
Group Condition BPHYT_RS11950 BPHYT_RS11955 BPHYT_RS11960 BPHYT_RS11965 BPHYT_RS11970
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -0.7 -4.7 -0.8 -0.6
phage 24hr PHYTO2 MOI 0.1 -0.2 -1.8 -2.7 +0.9 -0.9
phage 36hr PHYTO2 MOI 0.1 -0.2 +0.3 -2.8 +0.4 -1.9
phage 24hr PHYTO3 MOI 1 -0.2 -0.6 -2.7 +0.6 -1.4
phage 24hr PHYTO11 MOI 0.1 +0.1 -3.6 -1.5 +0.2 +0.9
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.1 -0.3 -2.5 +0.7 -1.9
phage 24hr PHYTO MOI 0.1 -0.4 -0.3 -2.7 +0.5 -1.0
nophagecontrol 36hr Phyto Lib Only +0.0 -0.4 +0.4 +0.3 -4.1
phage 24hr PHYTO8 MOI 1 +0.1 -0.2 -3.1 +0.2 -0.6
phage 24hr PHYTO9 MOI 0.1 +0.1 +0.1 -3.2 +0.1 -0.5
phage 24hr PHYTO3 MOI 0.1 -0.1 -2.0 -1.1 +0.4 -0.6
phage 36hr PHYTO8 MOI 10 +0.6 -1.6 -1.0 +0.5 -1.7
phage 24hr PHYTO3 MOI 10 -0.5 -0.4 -1.4 +0.8 -1.6
phage 24hr PHYTO MOI 0.1 +0.1 -2.4 +0.1 +0.5 -1.3
phage P. phyto PHYTO2 MOI 1 -1.0 -2.6 -0.7 +0.7 +0.6
phage 24hr PHYTO4 MOI 0.1 -0.2 -3.5 +0.8 +0.6 -0.4
phage 24hr PHYTO7 MOI 10 -0.5 -2.1 -0.6 -0.2 +0.8
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.1 +0.5 -1.9 +0.4 -1.4
phage 24hr PHYTO4 MOI 10 +0.1 -2.4 +1.1 +0.0 -1.4
phage 24hr PHYTO9 MOI 10 +0.1 +0.7 -3.1 +0.4 -0.4
phage 36hr PHYTO9 MOI 1 -0.6 -1.9 -1.2 +0.8 +0.5
nophagecontrol 36hr Phyto Lib only -0.8 -0.7 +1.6 +0.2 -1.7
phage 36hr PHYTO3 MOI 1 -0.6 +0.1 +1.0 +0.9 -2.0
phage 36hr PHYTO10 MOI 1 +0.1 +0.6 +1.7 +0.5 -2.2
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.6 -0.4 -1.6 +0.3 +3.7
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.7 -0.8 +1.4 +0.2 +1.4
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.3 -0.5 -1.1 +0.5 +3.7
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +0.6 +2.2 +1.4 +0.2 -1.4
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.1 +0.3 +0.3 +3.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 -0.2 +0.1 +3.2 +5.2
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