Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS11915	BPHYT_RS11920	BPHYT_RS11925	BPHYT_RS11930	BPHYT_RS11935
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	-1.1	-0.7	-1.3	N.D.
phage	24hr PHYTO7 MOI 10	-1.8	-0.0	-0.3	-0.1	N.D.
vitamin	With vitamins t1	-1.8	-0.1	-0.3	-0.0	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	-0.7	-0.2	-0.6	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-1.0	-0.1	-0.7	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9	-0.1	-0.3	-0.7	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5	+0.1	-0.5	-2.0	N.D.
phage	24hr PHYTO3 MOI 10	+0.1	+0.1	+0.1	-1.9	N.D.
phage	36hr PHYTO4 MOI 0.1	-0.2	-0.8	+0.4	-0.9	N.D.
no phage control	No phage control	-1.0	-0.7	+0.3	+0.0	N.D.
nophagecontrol	24hr Phyto Lib Only	-0.6	-0.6	-0.3	+0.5	N.D.
carbon source	D-Glucose (C)	+0.0	-0.6	-0.4	+0.9	N.D.
phage	24hr PHYTO6 MOI 1	+0.0	-1.2	+0.3	+1.0	N.D.
carbon source	Sebacic (C)	+0.6	+0.5	+0.1	-0.9	N.D.
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	+0.2	-0.6	-0.2	+1.2	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.7	-0.6	+0.4	+0.3	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.8	+1.3	-0.1	-0.9	N.D.
phage	24hr PHYTO3 MOI 1	+0.4	-0.4	+0.2	+1.2	N.D.
phage	24hr PHYTO1 MOI 10	+0.4	-0.2	+0.2	+1.2	N.D.
carbon source	Suberic (C)	+0.7	+0.9	+0.2	-0.1	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+1.0	-0.5	+0.3	+1.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+2.1	+0.7	+0.1	-1.0	N.D.
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+1.0	+0.2	+0.2	+0.5	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.4	+0.5	+0.6	+0.5	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.7	+0.0	+0.8	+0.7	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.7	-0.0	+0.5	+1.3	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+1.4	-0.3	+0.5	+1.0	N.D.
supernatant control	Vogels_fungal_media 0.1X	+0.6	+0.7	+0.9	+0.3	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+1.2	-0.0	+0.5	+1.0	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.4	+0.5	+1.1	+1.1	N.D.