Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS11805	BPHYT_RS11810	BPHYT_RS11815	BPHYT_RS11820	BPHYT_RS11825
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	+0.2	-0.2	-0.5	-5.4
phage	24hr PHYTO3 MOI 10	-3.6	-0.3	-0.4	-0.1	-1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.7	-1.0	-0.1	+0.4	-5.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.3	-3.4	-0.7	+1.3	-1.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	-1.4	-0.3	-0.5	-1.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.4	+1.0	+0.9	+0.1	-4.9
phage	36hr PHYTO9 MOI 0.1	-0.6	-0.2	+1.1	-0.4	-3.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.5	+0.2	+0.3	+0.1	-3.1
phage	24hr PHYTO6 MOI 10	-0.1	-2.0	+1.2	-0.3	-1.5
phage	36hr PHYTO9 MOI 1	+1.2	-0.7	+0.7	-0.2	-3.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.6	-0.2	-0.5	+0.7	-2.6
phage	24hr PHYTO2 MOI 0.1	-0.2	+0.2	+0.7	+0.2	-3.0
phage	24hr PHYTO6 MOI 1	-0.3	+0.1	+1.2	+0.5	-3.0
phage	24hr PHYTO MOI 0.1	+0.6	-0.1	+1.0	+0.0	-3.0
phage	24hr PHYTO9 MOI 10	+0.9	+0.4	+1.2	-0.5	-3.5
phage	24hr PHYTO8 MOI 1	-1.3	-0.4	+1.5	-0.1	-1.2
phage	P. phyto corn MOI 1	-2.5	-1.2	+1.1	+0.7	+0.6
phage	24hr PHYTO10 MOI 10	+0.4	+0.3	+0.3	+0.6	-3.0
phage	36hr PHYTO6 MOI 10	-1.6	-0.7	+1.2	-0.4	+0.6
phage	36hr PHYTO11 MOI 0.1	+0.4	+0.6	+1.0	+0.2	-3.0
phage	36hr PHYTO2 MOI 1	-2.3	-0.5	+1.4	-0.2	+1.2
phage	PHYTO3 MOI 0.1	+0.4	+1.2	-2.5	+0.4	+0.3
phage	P. phyto corn MOI 0.1	-0.3	+1.5	+0.3	+0.4	-2.1
phage	24hr PHYTO10 MOI 10	+0.9	-2.1	+0.8	+0.2	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-2.2	+1.0	+0.5	+1.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.8	+3.5	-0.5	-0.4	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	+2.7	-0.3	-0.3	-0.8
phage	24hr PHYTO9 MOI 0.1	-0.6	+0.9	+1.4	+0.3	-0.9
phage	24hr PHYTO6 MOI 0.1	-1.4	+1.0	+0.8	-0.0	+1.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	+3.6	+0.5	-0.4	+1.4