Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS11595	BPHYT_RS11600	BPHYT_RS11605	BPHYT_RS11610	BPHYT_RS11615
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	-0.8	-0.4	-0.6	N.D.
carbon source	Phenylacetic 5 mM (C)	N.D.	-1.0	-0.7	+0.2	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	-0.0	-0.0	-1.3	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	N.D.	-0.3	-0.3	-0.7	N.D.
phage	24hr PHYTO3 MOI 10	N.D.	-1.1	-0.3	+0.3	N.D.
nophagecontrol	36hr Phyto Lib only	N.D.	-1.0	+0.2	-0.1	N.D.
nitrogen source	L-Phenylalanine (N)	N.D.	-0.8	-0.4	+0.3	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	-0.5	-0.7	+0.5	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	+0.3	-0.4	-0.6	N.D.
phage	24hr PHYTO3 MOI 10	N.D.	-0.9	+0.1	+0.2	N.D.
nitrogen source	L-Proline (N)	N.D.	-0.5	-0.4	+0.4	N.D.
carbon source	D-Galacturonic Acid (C)	N.D.	-0.9	+0.1	+0.5	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	+0.7	-0.2	-0.6	N.D.
nophagecontrol	24hr Phyto Lib Only	N.D.	-0.5	+0.1	+0.7	N.D.
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	+0.8	-0.0	-0.4	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-0.3	+0.4	+0.6	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.3	+0.0	+1.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.7	-0.2	+0.6	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.0	-0.2	+1.3	N.D.
phage	36hr PHYTO4 MOI 1	N.D.	+0.7	+0.0	+0.5	N.D.
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	N.D.	+0.4	+0.1	+0.7	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.0	-0.1	+1.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.6	+0.0	+0.6	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.6	+0.0	+0.7	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.0	+0.1	+1.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	N.D.	+0.2	+0.6	+0.6	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.5	+0.1	+0.9	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.8	+0.6	+0.5	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.9	+0.2	+0.9	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.6	+0.4	+1.2	N.D.