Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS11510 and BPHYT_RS11515 are separated by 250 nucleotidesBPHYT_RS11515 and BPHYT_RS11520 are separated by 54 nucleotidesBPHYT_RS11520 and BPHYT_RS11525 are separated by 13 nucleotidesBPHYT_RS11525 and BPHYT_RS11530 are separated by 340 nucleotides BPHYT_RS11510: BPHYT_RS11510 - ABC transporter, at 2,617,204 to 2,618,805 _RS11510 BPHYT_RS11515: BPHYT_RS11515 - LysR family transcriptional regulator, at 2,619,056 to 2,619,988 _RS11515 BPHYT_RS11520: BPHYT_RS11520 - hydroxydechloroatrazine ethylaminohydrolase, at 2,620,043 to 2,621,440 _RS11520 BPHYT_RS11525: BPHYT_RS11525 - hypothetical protein, at 2,621,454 to 2,621,636 _RS11525 BPHYT_RS11530: BPHYT_RS11530 - 5-hydroxyisourate hydrolase, at 2,621,977 to 2,622,330 _RS11530
Group Condition BPHYT_RS11510 BPHYT_RS11515 BPHYT_RS11520 BPHYT_RS11525 BPHYT_RS11530
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 -0.6 +0.1 N.D. -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.7 -0.2 -0.5 N.D. -0.5
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.2 -1.0 -0.3 N.D. -0.8
tn7 efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50 -0.6 -0.4 -0.1 N.D. -0.8
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.2 -1.3 +0.0 N.D. -0.7
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -0.8 -0.4 N.D. -0.7
phage 36hr PHYTO2 MOI 1 +0.3 +0.4 -0.3 N.D. -2.0
phage 24hr PHYTO6 MOI 1 -0.2 +0.4 -0.2 N.D. -1.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 +0.3 -0.1 N.D. -1.0
phage 36hr PHYTO11 MOI 0.1 -0.4 +0.3 +0.1 N.D. -1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 +0.3 +0.3 N.D. -0.8
phage 24hr PHYTO1 MOI 10 -0.1 +0.4 +0.2 N.D. -1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 +0.7 -0.2 N.D. -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.6 +0.0 N.D. -0.9
phage 24hr PHYTO9 MOI 0.1 -0.1 +0.7 -0.3 N.D. -0.8
phage 36hr PHYTO6 MOI 10 -0.2 +0.6 +0.1 N.D. -1.0
phage 24hr PHYTO6 MOI 10 +0.1 +0.8 -0.3 N.D. -1.0
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.7 +1.3 -0.2 N.D. -2.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +0.1 +0.4 N.D. -0.9
phage 24hr PHYTO3 MOI 10 +0.8 -0.3 +0.4 N.D. -0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 +1.1 +0.3 N.D. -0.4
phage 36hr PHYTO6 MOI 0.1 +0.6 +0.3 +0.2 N.D. -0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 -0.0 +0.2 N.D. +1.0
phage 24hr PHYTO6 MOI 0.1 +0.7 +0.8 -0.4 N.D. -0.6
phage 36hr PHYTO2 MOI 1 +0.7 +0.8 +0.3 N.D. -1.0
nitrogen source L-Glutamic (N) -0.5 +0.7 +0.4 N.D. +0.4
phage 24hr PHYTO3 MOI 10 +0.9 +0.5 +0.1 N.D. -0.4
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +0.2 +1.2 -0.4 N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 +1.0 +0.2 N.D. +0.7
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.8 +0.4 +0.1 N.D. +1.9
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