Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS11340	BPHYT_RS11345	BPHYT_RS11350	BPHYT_RS11355	BPHYT_RS11360
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	N.D.	-0.3	N.D.	-0.3	-1.6
carbon source	D,L-Lactate (C)	N.D.	-0.0	N.D.	+0.1	-1.4
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	N.D.	+0.1	N.D.	+0.1	-1.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.3	N.D.	+0.2	-1.7
phage	36hr PHYTO6 MOI 10	N.D.	-0.0	N.D.	-0.4	-0.8
phage	24hr PHYTO1 MOI 10	N.D.	+0.1	N.D.	-0.2	-1.0
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	N.D.	-0.1	N.D.	+0.1	-0.9
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.1	N.D.	+0.2	-1.0
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.2	N.D.	+0.3	-1.0
carbon source	D-Fructose (C)	N.D.	+0.2	N.D.	+0.2	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.7	N.D.	+0.4	-1.5
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	N.D.	-0.1	N.D.	+0.5	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.4	N.D.	+0.3	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.4	N.D.	+0.5	-0.9
phage	24hr PHYTO2 MOI 0.1	N.D.	+0.5	N.D.	+0.3	-0.5
phage	24hr PHYTO11 MOI 0.1	N.D.	-0.6	N.D.	-0.0	+0.9
nophagecontrol	24hr Phyto Lib only	N.D.	-0.3	N.D.	-0.1	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.5	N.D.	+0.4	-0.5
phage	P. phyto PHYTO2 MOI 1	N.D.	-0.1	N.D.	-0.6	+1.0
phage	36hr PHYTO2 MOI 1	N.D.	+0.1	N.D.	-0.6	+0.9
phage	P. phyto PHYTO2 MOI 1	N.D.	-0.0	N.D.	-0.3	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.6	N.D.	+0.4	-0.4
nitrogen source	L-Glutamic (N)	N.D.	+0.0	N.D.	-0.3	+1.1
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	+0.0	N.D.	-0.4	+1.2
phage	24hr PHYTO4 MOI 10	N.D.	+0.1	N.D.	-0.0	+1.0
phage	36hr PHYTO7 MOI 1	N.D.	+0.1	N.D.	+0.2	+1.0
phage	24hr PHYTO3 MOI 10	N.D.	+0.2	N.D.	+0.2	+1.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.2	N.D.	+0.2	+1.3
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.4	N.D.	+0.6	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.4	N.D.	-0.2	+2.7