Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS11130 and BPHYT_RS11135 are separated by 325 nucleotidesBPHYT_RS11135 and BPHYT_RS11140 are separated by 169 nucleotidesBPHYT_RS11140 and BPHYT_RS11145 are separated by 20 nucleotidesBPHYT_RS11145 and BPHYT_RS11150 are separated by 251 nucleotides BPHYT_RS11130: BPHYT_RS11130 - chemotaxis protein, at 2,528,695 to 2,530,269 _RS11130 BPHYT_RS11135: BPHYT_RS11135 - LysR family transcriptional regulator, at 2,530,595 to 2,531,455 _RS11135 BPHYT_RS11140: BPHYT_RS11140 - major facilitator transporter, at 2,531,625 to 2,533,025 _RS11140 BPHYT_RS11145: BPHYT_RS11145 - short-chain dehydrogenase, at 2,533,046 to 2,533,819 _RS11145 BPHYT_RS11150: BPHYT_RS11150 - LysR family transcriptional regulator, at 2,534,071 to 2,535,000 _RS11150
Group Condition BPHYT_RS11130 BPHYT_RS11135 BPHYT_RS11140 BPHYT_RS11145 BPHYT_RS11150
phage P. phyto corn MOI 1 -0.9 N.D. -0.7 N.D. -1.8
phage P. phyto PHYTO2 MOI 1 -2.0 N.D. -0.1 N.D. -0.7
phage 36hr PHYTO3 MOI 0.1 -0.8 N.D. -0.5 N.D. -1.4
phage PHYTO3 MOI 0.1 -0.3 N.D. -0.8 N.D. -1.1
phage 36hr PHYTO11 MOI 0.1 -0.3 N.D. +0.3 N.D. -1.9
phage 36hr PHYTO1 MOI 10 -0.2 N.D. -0.4 N.D. -1.3
phage 36hr PHYTO1 MOI 1 -0.6 N.D. -0.5 N.D. -0.8
carbon source Phenylacetic 5 mM (C) -0.2 N.D. -0.8 N.D. -0.8
phage 36hr PHYTO1 MOI 1 +0.4 N.D. +0.0 N.D. -2.0
phage 24hr PHYTO6 MOI 10 +0.2 N.D. +0.1 N.D. -1.9
phage 24hr PHYTO10 MOI 10 +0.0 N.D. +0.1 N.D. -1.8
phage 24hr PHYTO3 MOI 1 +0.2 N.D. -0.6 N.D. -1.2
phage 24hr PHYTO11 MOI 1 +0.1 N.D. +0.4 N.D. -2.0
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 N.D. +0.4 N.D. -0.9
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent +0.4 N.D. +0.1 N.D. -1.6
phage 36hr PHYTO2 MOI 0.1 +0.3 N.D. +0.1 N.D. -1.3
nophagecontrol 24hr Phyto Lib only +0.3 N.D. +0.2 N.D. -1.4
carbon source Disodium Glutarate (C) -0.2 N.D. -1.0 N.D. +0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.3 N.D. +0.4 N.D. -1.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.7 N.D. +0.1 N.D. -1.1
phage 36hr PHYTO3 MOI 1 +0.1 N.D. +0.7 N.D. -1.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.8 N.D. -0.1 N.D. -0.8
phage 24hr PHYTO1 MOI 1 -1.0 N.D. +0.5 N.D. +0.4
motility outer cut, LB soft agar motility assay -0.0 N.D. +0.9 N.D. -0.8
phage 24hr PHYTO9 MOI 0.1 -0.5 N.D. +1.0 N.D. -0.4
phage P. phyto PHYTO2 MOI 0.1 +0.3 N.D. -0.9 N.D. +0.9
phage 24hr PHYTO1 MOI 10 +0.6 N.D. +0.7 N.D. -0.8
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.8 N.D. -0.5 N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 N.D. +0.7 N.D. +0.8
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 N.D. -0.0 N.D. +2.3
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