Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS11035	BPHYT_RS11040	BPHYT_RS11045	BPHYT_RS11050	BPHYT_RS11055
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	N.D.	-4.7	-0.2	-0.4	+0.1
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	-5.0	-0.1	+0.7	-0.2
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	N.D.	-4.0	+0.1	-0.5	+0.6
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	-1.1	-0.5	-1.5	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-2.4	-0.1	-0.5	+0.6
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	N.D.	-1.7	+0.1	-0.5	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-1.6	+0.1	-0.2	+0.5
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	-2.3	+0.1	+1.1	+0.4
nitrogen source	NAG (N)	N.D.	+0.9	-0.2	-1.7	+0.2
carbon source	D-Galacturonic Acid (C)	N.D.	-1.1	-0.2	+1.0	-0.4
phage	24hr PHYTO3 MOI 10	N.D.	+1.0	-0.2	-1.2	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+1.3	-0.5	-0.9	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-0.3	-0.5	+1.4	-0.2
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	N.D.	+1.4	-0.2	-0.8	+0.1
nitrogen source	L-Lysine (N)	N.D.	+1.7	+0.0	-0.5	-0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.9	+0.1	+1.4	-0.0
phage	24hr PHYTO10 MOI 10	N.D.	+1.2	-0.3	+0.5	-0.4
phage	24hr PHYTO4 MOI 10	N.D.	+1.6	+0.6	-0.9	-0.0
phage	P. phyto PHYTO2 MOI 1	N.D.	+0.6	-0.6	+1.0	+0.2
vitamin	With vitamins t1	N.D.	+1.1	-0.3	+0.6	+0.2
carbon source	Suberic (C)	N.D.	+2.2	-0.2	-0.1	-0.2
phage	36hr PHYTO10 MOI 10	N.D.	+1.1	-0.2	+0.7	+0.3
carbon source	Suberic (C)	N.D.	+1.7	-0.2	+0.4	+0.2
phage	36hr PHYTO4 MOI 0.1	N.D.	+0.7	+0.4	+1.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.7	-0.1	+2.2	+0.6
carbon source	2-Deoxy-D-Ribose (C)	N.D.	+1.7	-0.0	+0.6	-0.1
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	N.D.	+1.0	-0.1	+1.2	+0.1
no phage control	No phage control	N.D.	+0.6	+0.3	+0.9	+0.4
carbon source	2-Deoxy-D-Ribose (C)	N.D.	+1.7	-0.2	+1.0	+0.2
carbon source	adipate (C)	N.D.	+3.2	-0.0	+0.8	+0.0