Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS10945 and BPHYT_RS10950 are separated by 123 nucleotidesBPHYT_RS10950 and BPHYT_RS10955 are separated by 31 nucleotidesBPHYT_RS10955 and BPHYT_RS10960 are separated by 592 nucleotidesBPHYT_RS10960 and BPHYT_RS10965 are separated by 53 nucleotides BPHYT_RS10945: BPHYT_RS10945 - 2-deoxy-D-gluconate 3-dehydrogenase, at 2,490,845 to 2,491,615 _RS10945 BPHYT_RS10950: BPHYT_RS10950 - transcriptional regulator, at 2,491,739 to 2,492,611 _RS10950 BPHYT_RS10955: BPHYT_RS10955 - dioxygenase, at 2,492,643 to 2,493,575 _RS10955 BPHYT_RS10960: BPHYT_RS10960 - hypothetical protein, at 2,494,168 to 2,494,281 _RS10960 BPHYT_RS10965: BPHYT_RS10965 - hypothetical protein, at 2,494,335 to 2,494,724 _RS10965
Group Condition BPHYT_RS10945 BPHYT_RS10950 BPHYT_RS10955 BPHYT_RS10960 BPHYT_RS10965
phage 36hr PHYTO6 MOI 1 -2.8 +0.3 -0.7 N.D. -0.3
phage 36hr PHYTO11 MOI 1 -2.1 -0.9 -0.3 N.D. -0.0
phage 36hr PHYTO3 MOI 0.1 -3.1 -0.4 -0.1 N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.3 -0.1 -0.3 N.D. -0.3
phage 24hr PHYTO9 MOI 10 -2.8 +0.1 -0.1 N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.3 -0.6 -0.4 N.D. -0.4
phage 24hr PHYTO1 MOI 10 -1.5 -1.3 -0.2 N.D. +0.2
phage 24hr PHYTO10 MOI 10 -2.0 +0.0 -0.2 N.D. -0.4
phage P. phyto PHYTO2 MOI 0.1 -2.6 +0.1 -0.4 N.D. +0.5
phage 36hr PHYTO6 MOI 10 -1.8 +0.2 -0.1 N.D. -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.1 +0.2 -0.8 N.D. +0.5
phage 36hr PHYTO9 MOI 0.1 -1.1 -1.4 -0.3 N.D. +0.7
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -3.0 +0.4 -0.2 N.D. +0.7
phage P. phyto PHYTO2 MOI 1 -1.1 -1.4 +0.0 N.D. +0.4
phage 36hr PHYTO2 MOI 1 -2.9 +1.0 +0.2 N.D. +0.0
phage 24hr PHYTO6 MOI 0.1 -2.1 -0.0 -0.4 N.D. +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.1 +0.5 +0.1 N.D. -0.1
phage 36hr PHYTO9 MOI 1 -2.1 +0.2 +0.4 N.D. -0.0
phage 24hr PHYTO2 MOI 1 -2.1 +0.4 +0.3 N.D. +0.1
phage 36hr PHYTO8 MOI 10 -1.7 -0.3 +0.0 N.D. +0.8
phage 36hr PHYTO10 MOI 10 -2.6 +1.0 +0.3 N.D. +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.0 -0.6 +0.1 N.D. +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.4 +0.5 +0.3 N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.8 -0.5 +1.5 N.D. -0.3
phage 36hr PHYTO6 MOI 0.1 -1.1 +0.4 +0.6 N.D. +0.7
nophagecontrol 36hr Phyto Lib Only +1.1 -0.5 +0.1 N.D. +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 +0.8 +0.3 N.D. +1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.6 -0.0 +0.3 N.D. +2.0
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.2 +0.3 +0.7 N.D. +2.0
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.1 +10.0 -0.1 N.D. +0.0
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