Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS10930 and BPHYT_RS10935 are separated by 67 nucleotidesBPHYT_RS10935 and BPHYT_RS10940 are separated by 269 nucleotidesBPHYT_RS10940 and BPHYT_RS10945 are separated by 40 nucleotidesBPHYT_RS10945 and BPHYT_RS10950 are separated by 123 nucleotides BPHYT_RS10930: BPHYT_RS10930 - GCN5 family N-acetyltransferase, at 2,488,006 to 2,488,605 _RS10930 BPHYT_RS10935: BPHYT_RS10935 - 2-keto-3-deoxygluconate permease, at 2,488,673 to 2,489,698 _RS10935 BPHYT_RS10940: BPHYT_RS10940 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase, at 2,489,968 to 2,490,804 _RS10940 BPHYT_RS10945: BPHYT_RS10945 - 2-deoxy-D-gluconate 3-dehydrogenase, at 2,490,845 to 2,491,615 _RS10945 BPHYT_RS10950: BPHYT_RS10950 - transcriptional regulator, at 2,491,739 to 2,492,611 _RS10950
Group Condition BPHYT_RS10930 BPHYT_RS10935 BPHYT_RS10940 BPHYT_RS10945 BPHYT_RS10950
phage 36hr PHYTO3 MOI 0.1 -0.4 N.D. +0.0 -3.1 -0.4
phage 24hr PHYTO1 MOI 1 -1.1 N.D. -0.7 -1.2 -0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 N.D. -0.9 -1.3 -0.6
phage 24hr PHYTO1 MOI 10 +0.7 N.D. -1.0 -1.5 -1.3
phage 36hr PHYTO6 MOI 1 -0.3 N.D. -0.1 -2.8 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 N.D. -0.4 -1.0 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6 N.D. -0.6 -2.1 +0.5
phage 36hr PHYTO11 MOI 1 -0.8 N.D. -0.5 -0.8 -0.7
phage 36hr PHYTO11 MOI 1 +0.1 N.D. +0.2 -2.1 -0.9
phage 24hr PHYTO6 MOI 0.1 -0.7 N.D. +0.1 -2.1 -0.0
phage 36hr PHYTO9 MOI 1 -0.4 N.D. -0.3 -2.1 +0.2
phage 36hr PHYTO9 MOI 0.1 +0.3 N.D. -0.3 -1.1 -1.4
phage P. phyto PHYTO2 MOI 0.1 -0.1 N.D. +0.2 -2.6 +0.1
phage 36hr PHYTO8 MOI 10 -0.8 N.D. +0.5 -1.7 -0.3
phage 36hr PHYTO3 MOI 1 +0.4 N.D. -1.6 -0.6 -0.4
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent +0.3 N.D. +0.1 -3.0 +0.4
phage 36hr PHYTO2 MOI 1 -0.1 N.D. +0.2 -2.9 +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.0 N.D. +0.5 -2.3 -0.1
phage 36hr PHYTO8 MOI 10 +0.6 N.D. -1.7 -0.3 -0.3
phage 24hr PHYTO9 MOI 10 +0.3 N.D. +0.7 -2.8 +0.1
phage 24hr PHYTO3 MOI 10 +0.4 N.D. -1.0 -1.4 +0.4
phage 24hr PHYTO2 MOI 1 -0.3 N.D. +0.2 -2.1 +0.4
phage P. phyto PHYTO2 MOI 1 +1.2 N.D. -0.2 -1.1 -1.4
phage 36hr PHYTO10 MOI 10 -0.3 N.D. +0.6 -2.6 +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.3 N.D. +0.8 -0.7 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.0 N.D. -0.0 -2.1 +0.2
phage P. phyto corn MOI 1 +0.1 N.D. -1.2 +1.0 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.7 N.D. +0.1 -1.4 +0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.4 N.D. +0.8 -0.9 +1.1
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.5 N.D. +3.1 +0.1 +10.0
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