Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS10905 and BPHYT_RS10910 are separated by 96 nucleotidesBPHYT_RS10910 and BPHYT_RS10915 overlap by 4 nucleotidesBPHYT_RS10915 and BPHYT_RS10920 are separated by 331 nucleotidesBPHYT_RS10920 and BPHYT_RS10925 are separated by 321 nucleotides BPHYT_RS10905: BPHYT_RS10905 - membrane protein, at 2,481,947 to 2,482,942 _RS10905 BPHYT_RS10910: BPHYT_RS10910 - glucosyltransferase, at 2,483,039 to 2,484,199 _RS10910 BPHYT_RS10915: BPHYT_RS10915 - radical SAM protein, at 2,484,196 to 2,485,617 _RS10915 BPHYT_RS10920: BPHYT_RS10920 - cold-shock protein, at 2,485,949 to 2,486,152 _RS10920 BPHYT_RS10925: BPHYT_RS10925 - aldehyde dehydrogenase, at 2,486,474 to 2,487,919 _RS10925
Group Condition BPHYT_RS10905 BPHYT_RS10910 BPHYT_RS10915 BPHYT_RS10920 BPHYT_RS10925
phage 24hr PHYTO3 MOI 10 N.D. -0.5 -2.9 N.D. +0.1
carbon source L-Arabinose (C) N.D. -0.1 -0.1 N.D. -3.0
phage 24hr PHYTO3 MOI 10 N.D. +0.1 -0.6 N.D. -2.5
nophagecontrol 24hr Phyto Lib Only N.D. +0.0 -2.1 N.D. -0.6
vitamin With vitamins t1 N.D. -0.9 -0.2 N.D. -1.2
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. -1.1 -0.5 N.D. -0.7
vitamin No vitamins t2 N.D. -0.6 -0.4 N.D. -1.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. -0.3 -1.4 N.D. -0.4
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. -1.2 -0.6 N.D. -0.0
phage 36hr PHYTO2 MOI 1 N.D. -0.1 +0.4 N.D. -2.0
supernatant control Vogels_fungal_media; pH 5.5 N.D. +0.2 -0.8 N.D. -1.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB N.D. +0.4 -0.8 N.D. -1.1
phage 36hr PHYTO1 MOI 1 N.D. -0.6 +0.4 N.D. -1.2
carbon source Malonic (C) N.D. -0.9 -0.8 N.D. +0.5
phage 36hr PHYTO8 MOI 0.1 N.D. -0.7 -1.0 N.D. +0.6
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X N.D. -1.1 +0.6 N.D. -0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB N.D. -1.1 +0.9 N.D. -0.8
phage 36hr PHYTO MOI 0.1 N.D. +0.5 -1.1 N.D. -0.3
phage 24hr PHYTO10 MOI 10 N.D. +0.2 +0.5 N.D. -1.6
carbon source Sebacic (C) N.D. -0.1 +0.5 N.D. -1.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB N.D. -0.5 +0.8 N.D. -1.0
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X N.D. -0.9 +0.5 N.D. -0.3
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent N.D. +0.7 -0.7 N.D. -0.6
nophagecontrol 36hr Phyto Lib only N.D. -1.2 +0.6 N.D. +0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB N.D. +0.7 +0.2 N.D. -1.4
phage 36hr PHYTO3 MOI 1 N.D. -0.4 +0.9 N.D. -0.7
phage 24hr PHYTO6 MOI 10 N.D. +0.7 -1.2 N.D. +0.3
phage 24hr PHYTO9 MOI 10 N.D. -0.3 -0.5 N.D. +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.6 +0.8 N.D. -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +1.4 +0.1 N.D. -0.7
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BPHYT_RS10905
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