Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS10885 and BPHYT_RS10890 are separated by 12 nucleotidesBPHYT_RS10890 and BPHYT_RS10895 are separated by 179 nucleotidesBPHYT_RS10895 and BPHYT_RS10900 overlap by 4 nucleotidesBPHYT_RS10900 and BPHYT_RS10905 are separated by 129 nucleotides BPHYT_RS10885: BPHYT_RS10885 - glycosyl transferase, at 2,477,908 to 2,479,215 _RS10885 BPHYT_RS10890: BPHYT_RS10890 - hypothetical protein, at 2,479,228 to 2,479,578 _RS10890 BPHYT_RS10895: BPHYT_RS10895 - transcriptional regulator, at 2,479,758 to 2,480,417 _RS10895 BPHYT_RS10900: BPHYT_RS10900 - histidine kinase, at 2,480,414 to 2,481,817 _RS10900 BPHYT_RS10905: BPHYT_RS10905 - membrane protein, at 2,481,947 to 2,482,942 _RS10905
Group Condition BPHYT_RS10885 BPHYT_RS10890 BPHYT_RS10895 BPHYT_RS10900 BPHYT_RS10905
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.2 N.D. -1.1 -2.2 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.2 N.D. -0.6 +0.3 N.D.
phage 24hr PHYTO6 MOI 1 -0.9 N.D. -0.9 +0.8 N.D.
phage 24hr PHYTO9 MOI 0.1 +0.5 N.D. -1.2 -0.2 N.D.
phage 36hr PHYTO3 MOI 1 +0.6 N.D. -0.7 -0.8 N.D.
phage PHYTO3 MOI 0.1 -0.2 N.D. -1.1 +0.5 N.D.
phage 24hr PHYTO1 MOI 1 +0.5 N.D. -0.5 -0.8 N.D.
phage 36hr PHYTO1 MOI 1 -0.3 N.D. -1.2 +0.7 N.D.
phage 36hr PHYTO11 MOI 0.1 +0.3 N.D. -1.2 +0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 N.D. -0.4 +0.6 N.D.
phage 36hr PHYTO10 MOI 10 +0.3 N.D. -1.2 +0.5 N.D.
phage 24hr PHYTO MOI 0.1 +0.4 N.D. -1.4 +0.6 N.D.
nitrogen source L-Lysine (N) +0.3 N.D. +0.8 -1.3 N.D.
phage 24hr PHYTO4 MOI 0.1 +0.7 N.D. -0.7 -0.3 N.D.
phage 36hr PHYTO2 MOI 0.1 +0.8 N.D. -1.1 +0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 N.D. +0.5 +0.3 N.D.
phage 36hr PHYTO11 MOI 1 +1.0 N.D. -0.5 -0.3 N.D.
phage 24hr PHYTO6 MOI 0.1 +0.5 N.D. -0.7 +0.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 N.D. -1.0 +0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 N.D. -0.3 +1.3 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.6 N.D. -0.7 +0.5 N.D.
phage 24hr PHYTO4 MOI 10 +0.3 N.D. -0.7 +0.8 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.4 N.D. +0.7 -0.7 N.D.
phage 36hr PHYTO6 MOI 0.1 +0.8 N.D. -0.5 +0.4 N.D.
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -0.6 N.D. +0.3 +1.0 N.D.
phage 36hr PHYTO11 MOI 0.1 +1.1 N.D. -0.6 +0.5 N.D.
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +1.3 N.D. +0.4 -0.5 N.D.
phage P. phyto PHYTO2 MOI 1 +0.6 N.D. -0.4 +1.1 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.7 N.D. +0.9 -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.4 N.D. +0.3 +0.7 N.D.
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