Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS10855 and BPHYT_RS10860 overlap by 1 nucleotidesBPHYT_RS10860 and BPHYT_RS10865 are separated by 322 nucleotidesBPHYT_RS10865 and BPHYT_RS10870 overlap by 11 nucleotidesBPHYT_RS10870 and BPHYT_RS10875 overlap by 4 nucleotides BPHYT_RS10855: BPHYT_RS10855 - histidine kinase, at 2,469,047 to 2,470,411 _RS10855 BPHYT_RS10860: BPHYT_RS10860 - transcriptional regulator, at 2,470,411 to 2,471,070 _RS10860 BPHYT_RS10865: BPHYT_RS10865 - transporter, at 2,471,393 to 2,472,766 _RS10865 BPHYT_RS10870: BPHYT_RS10870 - RND transporter, at 2,472,756 to 2,473,877 _RS10870 BPHYT_RS10875: BPHYT_RS10875 - transporter, at 2,473,874 to 2,476,924 _RS10875
Group Condition BPHYT_RS10855 BPHYT_RS10860 BPHYT_RS10865 BPHYT_RS10870 BPHYT_RS10875
phage 24hr PHYTO3 MOI 10 -0.6 -0.1 -1.6 N.D. +0.3
phage P. phyto PHYTO2 MOI 1 -0.7 -0.3 -0.5 N.D. -0.5
nitrogen source L-Lysine (N) -0.4 -0.9 -1.0 N.D. +0.3
phage P. phyto PHYTO2 MOI 0.1 -0.1 -1.2 -0.2 N.D. -0.3
phage 24hr PHYTO3 MOI 10 -0.8 -0.9 -0.4 N.D. +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 -0.7 -0.9 N.D. +0.2
nophagecontrol 24hr Phyto Lib Only -0.0 +0.6 -0.7 N.D. -1.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -0.0 -0.9 N.D. +0.5
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.2 +0.4 +0.3 N.D. -1.3
phage 24hr PHYTO9 MOI 10 -1.2 -0.0 +0.6 N.D. -0.1
carbon source Suberic (C) +0.5 +0.2 -0.6 N.D. -0.5
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.7 -0.1 -0.3 N.D. +0.8
nitrogen source L-Isoleucine (N) +0.5 +0.4 -1.0 N.D. +0.1
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.4 -0.0 +0.5 N.D. -0.8
nitrogen source L-Glutamic (N) +1.0 -0.4 -0.2 N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -1.0 +0.3 N.D. +0.7
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -0.4 +0.1 N.D. +1.1
phage 24hr PHYTO10 MOI 1 +0.5 +0.5 -0.7 N.D. +0.1
phage 36hr PHYTO6 MOI 10 +0.6 +0.7 -1.2 N.D. +0.6
phage 36hr PHYTO7 MOI 1 +0.0 -0.5 +0.7 N.D. +0.6
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.5 +0.9 +0.1 N.D. +0.4
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.0 +1.3 -0.6 N.D. +0.3
carbon source 2-Deoxy-D-Ribose (C) -0.4 +0.9 +0.5 N.D. +0.2
carbon source adipate (C) +0.2 +0.4 -0.4 N.D. +1.1
phage 36hr PHYTO6 MOI 0.1 +0.4 -0.3 +0.5 N.D. +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 +0.3 +0.3 N.D. +1.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 -0.9 +0.8 N.D. +1.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 +0.9 +0.2 N.D. +0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.8 +0.2 N.D. +0.9
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +0.1 +0.1 N.D. +1.0
remove
BPHYT_RS10855
plot		 remove
BPHYT_RS10860
plot		 remove
BPHYT_RS10865		 remove
BPHYT_RS10870
plot		 remove
BPHYT_RS10875
plot