Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS10850 and BPHYT_RS10855 are separated by 25 nucleotidesBPHYT_RS10855 and BPHYT_RS10860 overlap by 1 nucleotidesBPHYT_RS10860 and BPHYT_RS10865 are separated by 322 nucleotidesBPHYT_RS10865 and BPHYT_RS10870 overlap by 11 nucleotides BPHYT_RS10850: BPHYT_RS10850 - LysR family transcriptional regulator, at 2,468,032 to 2,469,021 _RS10850 BPHYT_RS10855: BPHYT_RS10855 - histidine kinase, at 2,469,047 to 2,470,411 _RS10855 BPHYT_RS10860: BPHYT_RS10860 - transcriptional regulator, at 2,470,411 to 2,471,070 _RS10860 BPHYT_RS10865: BPHYT_RS10865 - transporter, at 2,471,393 to 2,472,766 _RS10865 BPHYT_RS10870: BPHYT_RS10870 - RND transporter, at 2,472,756 to 2,473,877 _RS10870
Group Condition BPHYT_RS10850 BPHYT_RS10855 BPHYT_RS10860 BPHYT_RS10865 BPHYT_RS10870
phage 36hr PHYTO8 MOI 10 -2.0 -0.4 -0.4 -0.9 N.D.
phage P. phyto PHYTO2 MOI 0.1 -1.8 -0.1 -1.2 -0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.7 -0.6 -0.0 -0.9 N.D.
nitrogen source L-Lysine (N) -1.0 -0.4 -0.9 -1.0 N.D.
carbon source D-Glucose (C) -2.5 -0.6 -0.0 +0.2 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -2.3 -0.1 -0.3 -0.0 N.D.
phage 24hr PHYTO2 MOI 1 -3.1 +0.5 +0.2 -0.4 N.D.
phage 24hr PHYTO6 MOI 0.1 -2.1 -0.3 +0.1 -0.2 N.D.
phage 24hr PHYTO3 MOI 10 +0.1 -0.6 -0.1 -1.6 N.D.
phage 36hr PHYTO2 MOI 0.1 -1.6 +0.2 -0.4 -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.8 +0.1 -0.1 -0.4 N.D.
phage P. phyto PHYTO2 MOI 1 -1.8 -0.6 -0.1 +0.3 N.D.
nitrogen source L-Serine (N) -1.2 +0.4 -0.4 -0.6 N.D.
phage 24hr PHYTO3 MOI 10 +0.8 -0.8 -0.9 -0.4 N.D.
phage 36hr PHYTO4 MOI 1 -1.3 -0.0 +0.7 -0.2 N.D.
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -1.2 +0.2 +0.6 -0.4 N.D.
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 -1.1 +0.2 +0.7 -0.4 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.2 +0.4 +0.6 -0.3 N.D.
nitrogen source L-Glutamic (N) -0.7 +1.0 -0.4 -0.2 N.D.
carbon source Azelaic (C) +1.2 +0.3 -0.8 -0.2 N.D.
phage 36hr PHYTO6 MOI 10 +0.8 +0.6 +0.7 -1.2 N.D.
vitamin No vitamins t2 +1.4 -0.1 -0.6 +0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +2.0 -0.5 -0.4 +0.1 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) +1.1 -0.5 +0.9 +0.1 N.D.
vitamin No vitamins t1 +1.0 +0.4 -0.3 +0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.3 +0.2 -0.3 +0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +2.2 -0.1 +0.2 -0.4 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +1.5 +0.4 -0.1 +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.6 -0.4 +0.9 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +4.3 -0.2 +0.2 -0.2 N.D.
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