Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS10845	BPHYT_RS10850	BPHYT_RS10855	BPHYT_RS10860	BPHYT_RS10865
nitrogen source	L-Lysine (N)	-0.7	-1.0	-0.4	-0.9	-1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-1.7	-0.6	-0.0	-0.9
phage	P. phyto PHYTO2 MOI 0.1	+0.0	-1.8	-0.1	-1.2	-0.2
phage	36hr PHYTO8 MOI 10	+0.4	-2.0	-0.4	-0.4	-0.9
carbon source	D-Glucose (C)	-0.3	-2.5	-0.6	-0.0	+0.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.4	-2.3	-0.1	-0.3	-0.0
phage	36hr PHYTO2 MOI 0.1	-0.2	-1.6	+0.2	-0.4	-0.5
phage	P. phyto PHYTO2 MOI 1	-0.3	-1.8	-0.6	-0.1	+0.3
nitrogen source	L-Serine (N)	-0.6	-1.2	+0.4	-0.4	-0.6
phage	24hr PHYTO2 MOI 1	+0.4	-3.1	+0.5	+0.2	-0.4
phage	24hr PHYTO3 MOI 10	+0.3	+0.1	-0.6	-0.1	-1.6
phage	P. phyto PHYTO2 MOI 1	-0.9	+0.5	-0.7	-0.3	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	-1.8	+0.1	-0.1	-0.4
phage	24hr PHYTO6 MOI 1	-0.6	-1.1	+0.6	+0.2	-0.3
phage	24hr PHYTO3 MOI 10	+0.1	+0.8	-0.8	-0.9	-0.4
nitrogen source	L-Isoleucine (N)	-0.6	-0.3	+0.5	+0.4	-1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.1	-0.7	-0.1	-0.5	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.7	+1.1	+0.2	-0.4	-0.6
phage	36hr PHYTO4 MOI 1	+0.7	-1.3	-0.0	+0.7	-0.2
vitamin	No vitamins t2	-0.4	+1.4	-0.1	-0.6	+0.5
phage	36hr PHYTO6 MOI 10	+0.5	+0.8	+0.6	+0.7	-1.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	+2.2	-0.1	+0.2	-0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+2.0	-0.5	-0.4	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.7	-0.0	+0.5	-0.9	+0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+1.2	+1.2	-0.2	-0.2	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.9	+0.8	+0.1	-0.4	+0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+1.6	-0.4	+0.9	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.5	+0.1	-0.2	+0.8	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.8	+1.3	+0.2	-0.3	+0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+4.3	-0.2	+0.2	-0.2