Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS10655 and BPHYT_RS10660 are separated by 163 nucleotidesBPHYT_RS10660 and BPHYT_RS10665 are separated by 50 nucleotidesBPHYT_RS10665 and BPHYT_RS10670 are separated by 140 nucleotidesBPHYT_RS10670 and BPHYT_RS10675 are separated by 69 nucleotides BPHYT_RS10655: BPHYT_RS10655 - LysR family transcriptional regulator, at 2,427,016 to 2,427,900 _RS10655 BPHYT_RS10660: BPHYT_RS10660 - ferredoxin, at 2,428,064 to 2,429,038 _RS10660 BPHYT_RS10665: BPHYT_RS10665 - muconolactone delta-isomerase, at 2,429,089 to 2,429,379 _RS10665 BPHYT_RS10670: BPHYT_RS10670 - catechol 1,2-dioxygenase, at 2,429,520 to 2,430,428 _RS10670 BPHYT_RS10675: BPHYT_RS10675 - muconate cycloisomerase, at 2,430,498 to 2,431,655 _RS10675
Group Condition BPHYT_RS10655 BPHYT_RS10660 BPHYT_RS10665 BPHYT_RS10670 BPHYT_RS10675
nophagecontrol 36hr Phyto Lib Only N.D. N.D. N.D. +0.6 -4.3
nitrogen source L-Lysine (N) N.D. N.D. N.D. -0.7 -2.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. -2.2 -0.4
phage P. phyto corn MOI 0.1 N.D. N.D. N.D. -0.0 -2.3
vitamin No vitamins t1 N.D. N.D. N.D. -1.4 -0.9
phage 36hr PHYTO11 MOI 1 N.D. N.D. N.D. -0.7 -1.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. -1.6 -0.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. N.D. N.D. -1.0 -1.0
carbon source Suberic (C) N.D. N.D. N.D. -1.1 -0.8
phage 24hr PHYTO11 MOI 0.1 N.D. N.D. N.D. -1.0 -0.8
phage 36hr PHYTO1 MOI 10 N.D. N.D. N.D. -0.8 -1.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. -0.4 -1.3
lb_nosalt LB_noSalt N.D. N.D. N.D. -1.2 -0.6
carbon source Phenylacetic 5 mM (C) N.D. N.D. N.D. -0.2 -1.4
nophagecontrol 36hr Phyto Lib Only N.D. N.D. N.D. -1.1 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -1.1 -0.5
phage 36hr PHYTO2 MOI 1 N.D. N.D. N.D. +0.4 -1.8
phage P. phyto PHYTO2 MOI 0.1 N.D. N.D. N.D. +0.8 -2.1
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. N.D. -1.5 +0.3
nophagecontrol 36hr Phyto Lib only N.D. N.D. N.D. -1.4 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. +0.5 -1.4
carbon source D-Fructose (C) N.D. N.D. N.D. -1.2 +0.4
motility outer cut, LB soft agar motility assay N.D. N.D. N.D. +1.0 -1.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. +1.0 -1.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. +1.6 -0.8
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.8 +1.8
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.6 +2.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. N.D. N.D. +0.4 +1.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB N.D. N.D. N.D. +0.2 +1.5
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.1 +2.3
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