Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS10460	BPHYT_RS10465	BPHYT_RS10470	BPHYT_RS10475	BPHYT_RS10480
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	N.D.	-0.1	-2.1	-1.6	-0.7
supernatant control	Vogels_fungal_media 0.1X	N.D.	-1.0	-1.7	-1.0	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-1.1	-1.9	-1.0	+0.1
phage	36hr PHYTO3 MOI 1	N.D.	+0.2	+1.1	-4.9	+0.1
carbon source	pyruvate (C)	N.D.	-1.3	-1.0	-0.8	-0.3
phage	24hr PHYTO2 MOI 0.1	N.D.	-0.3	-1.7	-0.9	-0.2
carbon source	D-Lactate (C)	N.D.	-1.0	-1.1	-0.6	-0.2
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.5	-1.1	-0.8	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	-0.5	-1.2	-0.6	-0.4
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	-0.7	-1.5	-0.5	+0.3
phage	24hr PHYTO4 MOI 10	N.D.	+0.6	-1.2	-1.0	-0.3
phage	24hr PHYTO10 MOI 1	N.D.	+0.2	+0.3	-2.2	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	+0.4	+0.5	-2.8	+0.3
phage	36hr PHYTO9 MOI 1	N.D.	+0.1	+1.0	-1.5	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.2	-1.7	+0.3	+0.6
vitamin	With vitamins t2	N.D.	+0.4	-2.1	+1.0	+0.5
vitamin	No vitamins t1	N.D.	+0.5	-1.3	+0.5	+0.5
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.1	+0.7	+1.5	+0.5
stress	Cephalothin 2 mg/ml	N.D.	+1.1	+0.7	+0.7	+0.4
motility	outer cut, LB soft agar motility assay	N.D.	+0.6	+0.5	+1.7	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.5	+1.3	+1.4	-0.1
carbon source	Tween 20 (C)	N.D.	+0.6	+1.0	+1.2	+0.4
motility	inner cut, LB soft agar motility assay	N.D.	+1.0	+1.3	+0.2	+0.7
temperature	LB, 37C	N.D.	+0.7	+1.2	+0.7	+0.6
motility	outer cut, LB soft agar motility assay	N.D.	+0.7	+0.9	+1.1	+0.5
temperature	LB, 23C	N.D.	+1.2	+1.0	+0.5	+0.6
temperature	LB, 23C	N.D.	+1.1	+0.8	+0.8	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+1.0	+0.7	+0.7	+1.0
stress	Bacitracin 0.25 mg/ml	N.D.	+0.6	+1.3	+1.3	+0.2
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	N.D.	+1.4	+1.0	+1.4	+0.5