Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS10395 and BPHYT_RS10400 are separated by 45 nucleotidesBPHYT_RS10400 and BPHYT_RS10405 are separated by 34 nucleotidesBPHYT_RS10405 and BPHYT_RS10410 are separated by 46 nucleotidesBPHYT_RS10410 and BPHYT_RS10415 are separated by 69 nucleotides BPHYT_RS10395: BPHYT_RS10395 - sulfonate ABC transporter, at 2,362,610 to 2,363,470 _RS10395 BPHYT_RS10400: BPHYT_RS10400 - taurine ABC transporter permease, at 2,363,516 to 2,364,388 _RS10400 BPHYT_RS10405: BPHYT_RS10405 - sulfonate ABC transporter ATP-binding protein, at 2,364,423 to 2,365,319 _RS10405 BPHYT_RS10410: BPHYT_RS10410 - monooxygenase, at 2,365,366 to 2,366,739 _RS10410 BPHYT_RS10415: BPHYT_RS10415 - taurine dioxygenase, at 2,366,809 to 2,367,756 _RS10415
Group Condition BPHYT_RS10395 BPHYT_RS10400 BPHYT_RS10405 BPHYT_RS10410 BPHYT_RS10415
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -1.9 -3.2 N.D. +0.1 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.8 -1.9 N.D. +0.4 +0.0
phage 24hr PHYTO10 MOI 10 -0.0 -3.3 N.D. -0.1 +0.4
phage 36hr PHYTO9 MOI 0.1 -1.3 -1.1 N.D. -0.0 -0.3
phage 24hr PHYTO9 MOI 0.1 -0.9 -1.8 N.D. -0.0 +0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -1.0 -1.8 N.D. +0.5 -0.0
phage 24hr PHYTO6 MOI 1 -0.4 -2.0 N.D. +0.4 -0.3
phage P. phyto corn MOI 1 -2.0 -0.6 N.D. +0.2 +0.2
phage 24hr PHYTO4 MOI 10 +1.0 -2.7 N.D. -0.4 +0.4
phage 36hr PHYTO8 MOI 0.1 -2.3 +0.9 N.D. +0.1 -0.1
vitamin With vitamins t2 -0.8 -1.2 N.D. +0.2 +0.4
phage P. phyto corn MOI 0.1 -0.5 -1.7 N.D. +0.5 +0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.6 -1.5 N.D. +0.5 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -1.9 N.D. +0.6 -0.3
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.7 -1.9 N.D. +0.7 -0.2
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.5 -1.1 N.D. +1.0 -0.0
carbon source Suberic (C) -1.6 +0.4 N.D. +0.3 +0.4
carbon source 2-Deoxy-D-ribonic lithium salt (C) -1.1 +0.7 N.D. +0.4 -0.5
phage 24hr PHYTO9 MOI 10 +0.4 -1.7 N.D. +0.2 +0.7
phage 24hr PHYTO6 MOI 10 -0.5 +1.5 N.D. -1.0 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.9 -1.0 N.D. +0.9 -0.1
phage 36hr PHYTO4 MOI 1 +1.3 +0.6 N.D. -0.7 -0.1
phage 36hr PHYTO2 MOI 1 +0.3 +2.0 N.D. -0.5 -0.5
phage 36hr PHYTO2 MOI 0.1 -0.5 +1.5 N.D. +0.5 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.2 -0.6 N.D. +1.2 -0.3
motility inner cut, LB soft agar motility assay -0.3 +1.1 N.D. +0.7 +0.6
phage 36hr PHYTO4 MOI 1 +1.1 +1.1 N.D. -0.2 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +1.3 N.D. +0.4 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.1 +1.8 N.D. +0.4 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 +1.5 N.D. +0.8 +0.0
remove
BPHYT_RS10395
plot		 remove
BPHYT_RS10400
plot		 remove
BPHYT_RS10405		 remove
BPHYT_RS10410
plot		 remove
BPHYT_RS10415
plot