Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS10330	BPHYT_RS10335	BPHYT_RS10340	BPHYT_RS10345	BPHYT_RS10350
carbon source	2-Deoxy-D-ribonic lithium salt (C)	N.D.	N.D.	-0.3	-3.8	-0.5
nitrogen source	L-Glutamic (N)	N.D.	N.D.	+0.0	-3.9	-0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.1	-3.0	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	-0.3	-2.7	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.1	-2.4	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	N.D.	-0.7	-2.0	+0.3
nitrogen source	L-Serine (N)	N.D.	N.D.	-0.4	-1.9	+0.0
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	N.D.	N.D.	+0.6	-2.0	-0.8
vitamin	With vitamins t1	N.D.	N.D.	+0.1	-1.6	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.3	-1.4	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	N.D.	+0.2	-1.8	+0.2
phage	24hr PHYTO11 MOI 1	N.D.	N.D.	-0.5	-1.6	+0.7
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	N.D.	N.D.	+1.1	-2.3	+0.1
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	N.D.	+0.1	-1.6	+0.7
carbon source	2-Deoxy-D-Ribose (C)	N.D.	N.D.	-0.6	-0.9	+0.7
phage	24hr PHYTO2 MOI 0.1	N.D.	N.D.	-1.6	+0.4	+0.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	N.D.	-0.7	+1.6	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	N.D.	-0.2	+1.5	-1.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	N.D.	N.D.	-1.0	+1.6	-0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.6	+2.0	-0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.8	+2.3	-0.7
phage	36hr PHYTO6 MOI 10	N.D.	N.D.	-1.0	+1.4	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	-0.3	+1.1	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	-0.5	+2.5	-0.2
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	N.D.	N.D.	-0.5	+0.8	+1.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	-0.6	+1.8	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	N.D.	-0.4	+1.4	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	-0.6	+2.3	+0.3
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	N.D.	N.D.	+0.4	+0.8	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	N.D.	-0.1	+2.0	+0.8