Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS10055	BPHYT_RS10060	BPHYT_RS10065	BPHYT_RS10070	BPHYT_RS10075
carbon source	L-Fucose (C)	N.D.	+0.1	-4.9	-0.2	-0.3
carbon source	Phenylacetic 5 mM (C)	N.D.	-0.1	-4.1	-0.5	+0.9
phage	P. phyto PHYTO2 MOI 1	N.D.	-0.1	-2.6	-0.0	-0.8
stress	Paraquat dichloride 0.064 mg/ml	N.D.	-0.0	-2.8	-0.4	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	N.D.	+0.0	-1.2	-1.4	-0.6
phage	36hr PHYTO7 MOI 0.1	N.D.	-0.3	-1.9	+0.1	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.1	-2.5	-0.4	+0.1
stress	Bacitracin 0.25 mg/ml	N.D.	+0.1	-2.8	-0.3	+0.1
carbon source	D-Ribose (C)	N.D.	+0.0	-1.9	-0.6	-0.2
phage	P. phyto PHYTO2 MOI 1	N.D.	-0.8	-2.2	+0.7	-0.2
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	N.D.	-0.3	-2.6	-0.0	+0.4
phage	36hr PHYTO1 MOI 10	N.D.	-0.4	-1.7	+0.2	-0.6
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	N.D.	-0.2	-2.3	-0.1	+0.6
nophagecontrol	36hr Phyto Lib Only	N.D.	-0.1	-1.9	+0.6	-0.5
phage	24hr PHYTO10 MOI 10	N.D.	-0.6	-1.5	+0.4	-0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	+0.4	-1.9	-0.2	-0.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.2	-1.5	+0.4	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.1	-2.0	+1.2	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.2	+1.4	-0.6	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.0	-1.3	+1.5	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.2	-0.8	+1.3	+0.6
phage	36hr PHYTO10 MOI 10	N.D.	-0.8	+2.1	+0.4	-0.7
phage	36hr PHYTO2 MOI 1	N.D.	-0.2	+1.7	+0.6	-1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.3	-1.5	+1.7	+1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.1	-1.6	+2.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.1	-0.7	+1.7	+0.4
phage	36hr PHYTO11 MOI 1	N.D.	-0.5	+1.7	+0.4	-0.3
phage	36hr PHYTO3 MOI 0.1	N.D.	-0.5	+2.2	+0.2	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.3	+0.4	+1.9	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.9	+0.8	-0.8	+2.0