Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS10030 and BPHYT_RS10035 are separated by 82 nucleotidesBPHYT_RS10035 and BPHYT_RS10040 are separated by 359 nucleotidesBPHYT_RS10040 and BPHYT_RS10045 are separated by 131 nucleotidesBPHYT_RS10045 and BPHYT_RS10050 are separated by 423 nucleotides BPHYT_RS10030: BPHYT_RS10030 - hemolysin D, at 2,283,831 to 2,285,072 _RS10030 BPHYT_RS10035: BPHYT_RS10035 - DSBA oxidoreductase, at 2,285,155 to 2,286,717 _RS10035 BPHYT_RS10040: BPHYT_RS10040 - hypothetical protein, at 2,287,077 to 2,287,283 _RS10040 BPHYT_RS10045: BPHYT_RS10045 - phosphohydrolase, at 2,287,415 to 2,288,110 _RS10045 BPHYT_RS10050: BPHYT_RS10050 - oxidoreductase, at 2,288,534 to 2,289,400 _RS10050
Group Condition BPHYT_RS10030 BPHYT_RS10035 BPHYT_RS10040 BPHYT_RS10045 BPHYT_RS10050
phage 24hr PHYTO1 MOI 10 +0.0 -1.0 -1.4 N.D. -0.4
phage 36hr PHYTO10 MOI 10 -0.5 -0.4 -1.2 N.D. -0.3
carbon source D-Glucose 20 mM (C) +0.1 +0.2 -2.6 N.D. -0.1
phage 36hr PHYTO4 MOI 1 -0.5 -0.4 -1.7 N.D. +0.3
phage 36hr PHYTO8 MOI 10 -0.4 -0.5 -1.5 N.D. +0.3
supernatant control Vogels_fungal_media 0.1X -0.2 -0.4 -1.7 N.D. +0.2
carbon source Phenylacetic 5 mM (C) -0.4 +0.7 -2.2 N.D. +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 +0.5 -1.9 N.D. +0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.2 -0.5 -1.6 N.D. +0.2
carbon source Azelaic (C) -0.1 +0.3 -2.0 N.D. +0.3
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +0.1 -0.5 -1.4 N.D. +0.4
phage 36hr PHYTO9 MOI 1 -0.1 +0.5 -0.9 N.D. -0.7
nophagecontrol 36hr Phyto Lib only -0.1 +0.2 -1.5 N.D. +0.5
phage 24hr PHYTO MOI 0.1 +0.4 +0.3 -1.7 N.D. +0.1
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +1.1 -0.2 -2.2 N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.9 -1.5 N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -0.4 +0.9 N.D. -0.4
stress Paraquat dichloride 0.032 mg/ml -0.1 +0.3 -1.3 N.D. +0.6
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.6 +0.4 -1.2 N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.9 -1.4 N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.0 -0.7 +1.0 N.D. -0.4
phage 24hr PHYTO9 MOI 0.1 -0.9 +0.2 +1.0 N.D. -0.2
phage 24hr PHYTO3 MOI 10 +0.1 +0.2 +0.9 N.D. -1.1
carbon source Malonic (C) +0.9 +0.5 -0.8 N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -0.5 +1.8 N.D. -0.0
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 -0.4 +1.3 N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 -0.9 +1.3 N.D. +0.4
phage 36hr PHYTO8 MOI 10 +0.3 -0.3 +1.2 N.D. +0.4
phage 24hr PHYTO3 MOI 10 +0.5 +0.1 +1.5 N.D. -0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.4 +0.9 +1.5 N.D. -0.7
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