Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS09900 and BPHYT_RS09905 are separated by 37 nucleotidesBPHYT_RS09905 and BPHYT_RS09910 are separated by 40 nucleotidesBPHYT_RS09910 and BPHYT_RS09915 are separated by 198 nucleotidesBPHYT_RS09915 and BPHYT_RS09920 are separated by 310 nucleotides BPHYT_RS09900: BPHYT_RS09900 - aldehyde dehydrogenase, at 2,253,435 to 2,254,913 _RS09900 BPHYT_RS09905: BPHYT_RS09905 - hypothetical protein, at 2,254,951 to 2,255,898 _RS09905 BPHYT_RS09910: BPHYT_RS09910 - tyramine oxidase, at 2,255,939 to 2,257,924 _RS09910 BPHYT_RS09915: BPHYT_RS09915 - AraC family transcriptional regulator, at 2,258,123 to 2,259,127 _RS09915 BPHYT_RS09920: BPHYT_RS09920 - amino acid permease, at 2,259,438 to 2,260,841 _RS09920
Group Condition BPHYT_RS09900 BPHYT_RS09905 BPHYT_RS09910 BPHYT_RS09915 BPHYT_RS09920
phage 36hr PHYTO11 MOI 1 -1.2 -3.2 +0.1 N.D. -1.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.1 -5.8 +0.4 N.D. +0.1
nophagecontrol 24hr Phyto Lib Only -0.0 -3.0 +0.0 N.D. -1.7
phage 24hr PHYTO6 MOI 1 -1.2 -0.9 -0.2 N.D. -2.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.2 -2.6 -1.1 N.D. -0.4
phage 36hr PHYTO8 MOI 10 -0.3 -2.9 +0.6 N.D. -1.5
phage 24hr PHYTO1 MOI 10 -0.4 -3.1 +0.3 N.D. -0.8
phage 24hr PHYTO2 MOI 1 -0.6 -3.1 +0.1 N.D. -0.2
phage 24hr PHYTO6 MOI 10 -0.4 -2.8 -0.1 N.D. -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -2.5 +0.2 N.D. -0.8
phage 36hr PHYTO3 MOI 1 -0.5 -1.5 +0.4 N.D. -1.8
phage 24hr PHYTO1 MOI 1 +0.1 -3.2 +0.2 N.D. -0.6
phage 36hr PHYTO10 MOI 10 -0.2 -2.7 +0.0 N.D. -0.5
phage 24hr PHYTO7 MOI 1 +0.0 -3.3 +0.2 N.D. -0.1
phage 24hr PHYTO3 MOI 1 -0.5 -3.0 +0.3 N.D. +0.1
phage 36hr PHYTO6 MOI 0.1 -0.1 -1.5 -0.3 N.D. -1.2
phage 24hr PHYTO10 MOI 1 -0.1 -1.6 -0.1 N.D. -1.3
phage 24hr PHYTO3 MOI 10 -0.1 +0.2 +0.0 N.D. -3.1
nitrogen source L-Lysine (N) -1.1 -0.5 -0.8 N.D. -0.5
phage 36hr PHYTO7 MOI 1 -0.2 -2.8 +0.6 N.D. -0.4
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -0.1 -1.8 +0.2 N.D. -0.7
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.4 -1.0 -1.1 N.D. -0.7
phage 24hr PHYTO3 MOI 10 +0.0 -0.6 +0.3 N.D. -2.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB -0.8 -1.4 -0.6 N.D. +0.5
phage P. phyto PHYTO2 MOI 1 +0.4 -1.6 -0.2 N.D. -0.9
phage 24hr PHYTO8 MOI 1 +0.2 -1.6 +0.8 N.D. +0.2
nophagecontrol 24hr Phyto Lib Only -0.4 +1.4 +0.5 N.D. -1.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.9 -0.6 +1.1 N.D. +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.9 -0.6 +1.0 N.D. +0.8
carbon source Malonic (C) +0.4 +1.2 +0.1 N.D. +1.0
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