Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS09890 and BPHYT_RS09895 are separated by 26 nucleotidesBPHYT_RS09895 and BPHYT_RS09900 are separated by 117 nucleotidesBPHYT_RS09900 and BPHYT_RS09905 are separated by 37 nucleotidesBPHYT_RS09905 and BPHYT_RS09910 are separated by 40 nucleotides BPHYT_RS09890: BPHYT_RS09890 - choline dehydrogenase, at 2,250,694 to 2,252,355 _RS09890 BPHYT_RS09895: BPHYT_RS09895 - LysR family transcriptional regulator, at 2,252,382 to 2,253,317 _RS09895 BPHYT_RS09900: BPHYT_RS09900 - aldehyde dehydrogenase, at 2,253,435 to 2,254,913 _RS09900 BPHYT_RS09905: BPHYT_RS09905 - hypothetical protein, at 2,254,951 to 2,255,898 _RS09905 BPHYT_RS09910: BPHYT_RS09910 - tyramine oxidase, at 2,255,939 to 2,257,924 _RS09910
Group Condition BPHYT_RS09890 BPHYT_RS09895 BPHYT_RS09900 BPHYT_RS09905 BPHYT_RS09910
phage 24hr PHYTO6 MOI 1 +0.0 -4.1 -1.2 -0.9 -0.2
phage 24hr PHYTO2 MOI 1 -0.2 -2.5 -0.6 -3.1 +0.1
phage 24hr PHYTO7 MOI 1 -1.0 -1.8 +0.0 -3.3 +0.2
phage 36hr PHYTO10 MOI 10 -0.1 -2.3 -0.2 -2.7 +0.0
phage 24hr PHYTO3 MOI 1 -1.3 -0.4 -0.5 -3.0 +0.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.2 -0.8 -0.2 -2.6 -1.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.6 +0.1 -0.1 -5.8 +0.4
phage 36hr PHYTO11 MOI 1 +0.0 -0.5 -1.2 -3.2 +0.1
phage 36hr PHYTO7 MOI 1 +0.0 -2.3 -0.2 -2.8 +0.6
phage 36hr PHYTO3 MOI 1 -0.4 -4.3 +0.1 +0.3 -0.2
phage 36hr PHYTO11 MOI 0.1 +0.1 -4.2 +0.0 -0.3 +0.0
phage 36hr PHYTO8 MOI 10 -0.9 -0.8 -0.3 -2.9 +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -3.7 +0.4 -0.0 -0.2
phage 36hr PHYTO8 MOI 10 -0.7 -3.9 +0.1 +0.0 +0.4
phage 36hr PHYTO6 MOI 10 +0.0 -3.9 -0.1 -0.6 +0.7
phage 24hr PHYTO8 MOI 1 +0.2 -3.0 +0.2 -1.6 +0.8
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.7 -1.0 +0.4 -1.0 -1.1
carbon source D-Glucose (C) +0.0 -2.5 -0.3 -0.7 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 -0.7 -0.5 -2.5 +0.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -1.3 +0.5 -0.9 -0.6
phage 24hr PHYTO1 MOI 1 -0.1 +0.4 +0.1 -3.2 +0.2
phage 24hr PHYTO6 MOI 10 +0.2 +0.6 -0.4 -2.8 -0.1
phage 24hr PHYTO1 MOI 10 +0.3 +0.5 -0.4 -3.1 +0.3
phage 36hr PHYTO4 MOI 1 -0.9 -2.5 -0.0 +1.1 +0.0
nophagecontrol 36hr Phyto Lib Only -0.1 -2.6 -0.3 +0.6 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 +1.4 -0.3 -0.6 -1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 +1.8 -0.0 -1.4 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.9 -2.0 -0.0 +1.0 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 +2.0 +0.6 -0.4 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.9 -0.6 +0.9 -0.6 +1.1
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