Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS09880 and BPHYT_RS09885 are separated by 0 nucleotidesBPHYT_RS09885 and BPHYT_RS09890 are separated by 70 nucleotidesBPHYT_RS09890 and BPHYT_RS09895 are separated by 26 nucleotidesBPHYT_RS09895 and BPHYT_RS09900 are separated by 117 nucleotides BPHYT_RS09880: BPHYT_RS09880 - MFS transporter, at 2,248,083 to 2,249,405 _RS09880 BPHYT_RS09885: BPHYT_RS09885 - isomerase, at 2,249,406 to 2,250,623 _RS09885 BPHYT_RS09890: BPHYT_RS09890 - choline dehydrogenase, at 2,250,694 to 2,252,355 _RS09890 BPHYT_RS09895: BPHYT_RS09895 - LysR family transcriptional regulator, at 2,252,382 to 2,253,317 _RS09895 BPHYT_RS09900: BPHYT_RS09900 - aldehyde dehydrogenase, at 2,253,435 to 2,254,913 _RS09900
Group Condition BPHYT_RS09880 BPHYT_RS09885 BPHYT_RS09890 BPHYT_RS09895 BPHYT_RS09900
phage 24hr PHYTO6 MOI 1 -0.4 -0.3 +0.0 -4.1 -1.2
phage 36hr PHYTO3 MOI 1 -0.2 -0.3 -0.4 -4.3 +0.1
phage 36hr PHYTO8 MOI 10 +0.4 -0.6 -0.7 -3.9 +0.1
phage 24hr PHYTO11 MOI 0.1 -0.8 -0.7 -0.7 -1.8 -0.6
phage 36hr PHYTO11 MOI 0.1 +0.0 -0.4 +0.1 -4.2 +0.0
phage 36hr PHYTO6 MOI 10 +0.3 -0.1 +0.0 -3.9 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 -0.0 -0.8 -3.7 +0.4
phage 36hr PHYTO4 MOI 1 +0.6 -0.5 -0.9 -2.5 -0.0
phage 24hr PHYTO2 MOI 0.1 +0.4 -0.3 -0.4 -2.6 -0.4
phage 24hr PHYTO2 MOI 1 +0.3 -0.1 -0.2 -2.5 -0.6
nophagecontrol 36hr Phyto Lib Only +0.1 -0.3 -0.1 -2.6 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -0.3 +0.4 -2.2 -0.3
phage 24hr PHYTO8 MOI 1 +0.0 -0.5 +0.2 -3.0 +0.2
phage 36hr PHYTO7 MOI 0.1 +0.3 -1.0 -0.3 -1.5 -0.7
phage 24hr PHYTO9 MOI 10 +0.2 -0.5 -0.4 -2.3 +0.3
phage 24hr PHYTO10 MOI 10 +0.5 -0.4 -1.0 -1.1 -0.5
phage P. phyto PHYTO2 MOI 0.1 +0.3 -1.0 +0.3 -1.2 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 +0.3 -0.7 -1.8 -0.4
phage 24hr PHYTO MOI 0.1 +0.7 -0.9 -1.3 -0.2 -0.5
carbon source D-Glucose (C) +0.4 +0.3 +0.0 -2.5 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -2.4 -0.1 +0.7 -0.7 +0.6
phage 36hr PHYTO2 MOI 1 +0.9 -0.2 -1.6 +0.1 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 -0.5 -0.5 -1.1 +1.3
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.1 +0.7 +0.1 -2.3 +0.4
supernatant control Vogels_fungal_media; pH 5.5 +0.1 -0.9 +0.5 +1.2 -0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.8 -0.3 +0.9 -0.6 +0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 -0.5 -0.1 +1.8 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 -0.2 -0.6 +2.0 +0.6
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.4 +0.3 +0.8 -0.7 +1.1
carbon source Malonic (C) +1.7 +0.1 +0.4 +1.2 +0.4
remove
BPHYT_RS09880
plot		 remove
BPHYT_RS09885
plot		 remove
BPHYT_RS09890		 remove
BPHYT_RS09895
plot		 remove
BPHYT_RS09900
plot