Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS09865 and BPHYT_RS09870 are separated by 143 nucleotidesBPHYT_RS09870 and BPHYT_RS09875 are separated by 285 nucleotidesBPHYT_RS09875 and BPHYT_RS09880 are separated by 153 nucleotidesBPHYT_RS09880 and BPHYT_RS09885 are separated by 0 nucleotides BPHYT_RS09865: BPHYT_RS09865 - methyltransferase, at 2,244,409 to 2,244,897 _RS09865 BPHYT_RS09870: BPHYT_RS09870 - membrane protein, at 2,245,041 to 2,246,198 _RS09870 BPHYT_RS09875: BPHYT_RS09875 - aldehyde dehydrogenase, at 2,246,484 to 2,247,929 _RS09875 BPHYT_RS09880: BPHYT_RS09880 - MFS transporter, at 2,248,083 to 2,249,405 _RS09880 BPHYT_RS09885: BPHYT_RS09885 - isomerase, at 2,249,406 to 2,250,623 _RS09885
Group Condition BPHYT_RS09865 BPHYT_RS09870 BPHYT_RS09875 BPHYT_RS09880 BPHYT_RS09885
phage 24hr PHYTO3 MOI 10 N.D. -2.2 -0.9 -0.1 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. +0.4 -0.6 -2.4 -0.1
phage 36hr PHYTO9 MOI 1 N.D. -1.3 -0.5 -0.3 -0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. -2.4 +0.3 +0.5 -1.0
phage 36hr PHYTO6 MOI 0.1 N.D. -2.1 +0.1 +0.1 -0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.9 -0.6 -0.0 -1.0
phage 24hr PHYTO6 MOI 0.1 N.D. -1.8 +0.4 +0.2 -1.0
nophagecontrol 24hr Phyto Lib Only N.D. -2.2 +0.2 +0.4 -0.4
phage 24hr PHYTO3 MOI 0.1 N.D. -1.4 -0.4 +0.4 -0.4
phage 24hr PHYTO11 MOI 0.1 N.D. +0.4 -0.5 -0.8 -0.7
phage 36hr PHYTO3 MOI 1 N.D. -1.0 +0.1 +0.3 -1.0
phage 36hr PHYTO1 MOI 1 N.D. -1.7 +0.0 +0.5 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.8 +0.6 -0.6 -0.5
phage PHYTO3 MOI 0.1 N.D. -1.0 -0.3 +0.6 -0.5
phage 36hr PHYTO MOI 0.1 N.D. -1.0 -0.2 +0.7 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.5 +0.5 -2.2 +0.4
phage 36hr PHYTO10 MOI 10 N.D. +0.2 -0.0 -1.5 +0.6
phage 36hr PHYTO3 MOI 0.1 N.D. -1.0 +0.7 +0.4 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.1 +1.0 -1.1 +0.1
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. -1.2 +0.1 +0.5 +0.9
phage P. phyto corn MOI 1 N.D. +0.2 +0.9 +0.9 -1.2
phage 36hr PHYTO4 MOI 1 N.D. +0.7 +0.3 +0.6 -0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB N.D. +1.0 +0.4 +0.4 -0.3
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. +1.0 -0.4 +0.7 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.7 +0.6 -0.3 +0.8
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. +0.7 +0.8 -0.3 +0.7
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. +1.0 +0.5 -0.4 +0.9
carbon source Malonic (C) N.D. +0.5 -0.4 +1.7 +0.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. +0.4 -0.2 +1.1 +0.7
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB N.D. +0.5 +0.5 +0.5 +1.0
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BPHYT_RS09865
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BPHYT_RS09870
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BPHYT_RS09885
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