Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS09840 and BPHYT_RS09845 are separated by 32 nucleotidesBPHYT_RS09845 and BPHYT_RS09850 are separated by 34 nucleotidesBPHYT_RS09850 and BPHYT_RS09855 are separated by 199 nucleotidesBPHYT_RS09855 and BPHYT_RS09860 are separated by 119 nucleotides BPHYT_RS09840: BPHYT_RS09840 - nitrite reductase, at 2,234,815 to 2,237,355 _RS09840 BPHYT_RS09845: BPHYT_RS09845 - nitrite reductase, at 2,237,388 to 2,237,741 _RS09845 BPHYT_RS09850: BPHYT_RS09850 - molybdopterin oxidoreductase, at 2,237,776 to 2,241,987 _RS09850 BPHYT_RS09855: BPHYT_RS09855 - major facilitator superfamily protein, at 2,242,187 to 2,243,554 _RS09855 BPHYT_RS09860: BPHYT_RS09860 - pilus assembly protein PilP, at 2,243,674 to 2,244,348 _RS09860
Group Condition BPHYT_RS09840 BPHYT_RS09845 BPHYT_RS09850 BPHYT_RS09855 BPHYT_RS09860
carbon source D-Glucose (C) -0.0 N.D. -2.0 N.D. -4.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 N.D. -0.6 N.D. -4.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.4 N.D. -0.8 N.D. -3.9
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent +0.4 N.D. +0.7 N.D. -5.0
carbon source Tween 20 (C) +0.2 N.D. -0.3 N.D. -3.4
phage 24hr PHYTO11 MOI 0.1 -0.1 N.D. -0.4 N.D. -2.9
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.2 N.D. +0.4 N.D. -3.6
phage 36hr PHYTO3 MOI 1 -0.3 N.D. -0.4 N.D. -2.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 N.D. -0.8 N.D. -2.6
phage 36hr PHYTO9 MOI 0.1 +0.3 N.D. -0.5 N.D. -2.8
carbon source adipate (C) +0.2 N.D. -0.2 N.D. -2.9
phage 24hr PHYTO2 MOI 1 -0.6 N.D. +0.5 N.D. -2.7
carbon source Suberic (C) +0.2 N.D. -0.6 N.D. -2.2
phage 36hr PHYTO11 MOI 0.1 -0.1 N.D. +0.2 N.D. -2.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 N.D. +0.1 N.D. -2.6
phage 36hr PHYTO2 MOI 1 -0.7 N.D. +0.8 N.D. -2.6
phage 24hr PHYTO11 MOI 1 -0.1 N.D. +0.7 N.D. -2.8
phage 24hr PHYTO6 MOI 1 +0.1 N.D. +0.4 N.D. -2.7
phage 24hr PHYTO2 MOI 0.1 +0.2 N.D. +0.4 N.D. -2.7
phage 36hr PHYTO1 MOI 1 +0.1 N.D. +0.4 N.D. -2.7
phage 24hr PHYTO3 MOI 10 +0.0 N.D. +0.8 N.D. -2.9
phage 36hr PHYTO7 MOI 1 -0.1 N.D. +0.5 N.D. -2.4
phage 24hr PHYTO MOI 0.1 -0.4 N.D. +1.2 N.D. -2.7
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 N.D. -2.7 N.D. +0.8
phage 24hr PHYTO10 MOI 10 +0.5 N.D. +0.6 N.D. -2.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 N.D. +1.2 N.D. -1.8
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.3 N.D. +0.8 N.D. -2.0
phage P. phyto PHYTO2 MOI 1 -0.5 N.D. -0.8 N.D. +2.3
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 N.D. +2.0 N.D. -1.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +0.5 N.D. -0.1 N.D. +2.4
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BPHYT_RS09840
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BPHYT_RS09845
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