Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS09815 and BPHYT_RS09820 are separated by 121 nucleotidesBPHYT_RS09820 and BPHYT_RS09825 are separated by 400 nucleotidesBPHYT_RS09825 and BPHYT_RS09835 are separated by 342 nucleotidesBPHYT_RS09835 and BPHYT_RS09840 are separated by 705 nucleotides BPHYT_RS09815: BPHYT_RS09815 - malate synthase, at 2,228,975 to 2,231,149 _RS09815 BPHYT_RS09820: BPHYT_RS09820 - hypothetical protein, at 2,231,271 to 2,231,675 _RS09820 BPHYT_RS09825: BPHYT_RS09825 - Fe-S protein, at 2,232,076 to 2,232,951 _RS09825 BPHYT_RS09835: BPHYT_RS09835 - uroporphyrin-III C-methyltransferase, at 2,233,294 to 2,234,109 _RS09835 BPHYT_RS09840: BPHYT_RS09840 - nitrite reductase, at 2,234,815 to 2,237,355 _RS09840
Group Condition BPHYT_RS09815 BPHYT_RS09820 BPHYT_RS09825 BPHYT_RS09835 BPHYT_RS09840
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.7 N.D. -4.8 -0.7 +0.8
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.6 N.D. -2.2 -0.3 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.1 N.D. -3.5 -0.6 -0.1
supernatant control Vogels_fungal_media; pH 5.5 +1.2 N.D. -4.7 +0.3 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.9 N.D. -2.0 +0.7 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 N.D. -3.0 +0.2 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4 N.D. -2.1 +0.0 +0.4
phage P. phyto PHYTO2 MOI 1 -0.2 N.D. -2.0 +0.6 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 N.D. -3.3 +0.4 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.7 N.D. -2.1 +0.3 -0.0
phage 24hr PHYTO4 MOI 10 +1.4 N.D. -1.5 -0.3 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 N.D. -1.6 +0.6 -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -1.7 N.D. +0.9 -0.1 +0.6
phage 36hr PHYTO8 MOI 10 +1.1 N.D. -1.5 +0.1 +0.3
carbon source Tween 20 (C) -1.5 N.D. +0.6 +0.7 +0.2
phage 24hr PHYTO6 MOI 0.1 +1.6 N.D. -1.8 +0.2 +0.1
phage 36hr PHYTO2 MOI 1 +1.7 N.D. -0.4 +0.2 -0.7
phage 36hr PHYTO1 MOI 1 +1.8 N.D. -0.9 +0.3 -0.2
phage 24hr PHYTO9 MOI 10 +1.7 N.D. -0.6 +0.7 -0.3
phage 36hr PHYTO2 MOI 1 +1.8 N.D. -0.8 -0.0 +0.5
phage 24hr PHYTO6 MOI 1 +2.0 N.D. -0.5 +0.3 +0.1
phage 36hr PHYTO6 MOI 1 +2.0 N.D. +0.4 +0.6 -0.4
phage 36hr PHYTO3 MOI 1 +1.7 N.D. +1.1 +0.2 -0.3
phage 36hr PHYTO7 MOI 1 +2.0 N.D. +0.6 +0.3 -0.1
phage 24hr PHYTO6 MOI 10 +1.7 N.D. +1.3 -0.1 -0.1
phage 36hr PHYTO4 MOI 1 +1.8 N.D. +0.9 +0.4 -0.1
phage 36hr PHYTO7 MOI 0.1 +1.8 N.D. +1.1 +0.2 +0.0
phage 36hr PHYTO9 MOI 1 +1.9 N.D. +1.0 +0.3 +0.1
nophagecontrol 36hr Phyto Lib only +1.8 N.D. +1.3 +0.2 +0.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.6 N.D. +0.1 +1.6 +0.6
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