Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS09775 and BPHYT_RS09780 are separated by 73 nucleotidesBPHYT_RS09780 and BPHYT_RS09785 overlap by 4 nucleotidesBPHYT_RS09785 and BPHYT_RS09790 are separated by 116 nucleotidesBPHYT_RS09790 and BPHYT_RS09795 are separated by 710 nucleotides BPHYT_RS09775: BPHYT_RS09775 - hypothetical protein, at 2,217,698 to 2,219,899 _RS09775 BPHYT_RS09780: BPHYT_RS09780 - polysaccharide biosynthesis protein, at 2,219,973 to 2,221,439 _RS09780 BPHYT_RS09785: BPHYT_RS09785 - glycosyl transferase family 1, at 2,221,436 to 2,223,892 _RS09785 BPHYT_RS09790: BPHYT_RS09790 - acyltransferase, at 2,224,009 to 2,225,220 _RS09790 BPHYT_RS09795: BPHYT_RS09795 - UTP--glucose-1-phosphate uridylyltransferase, at 2,225,931 to 2,226,848 _RS09795
Group Condition BPHYT_RS09775 BPHYT_RS09780 BPHYT_RS09785 BPHYT_RS09790 BPHYT_RS09795
phage 24hr PHYTO11 MOI 1 +0.1 -0.3 -0.4 -0.7 -0.3
phage 36hr PHYTO3 MOI 1 -0.3 +0.3 -0.1 -0.7 -0.7
phage 36hr PHYTO1 MOI 10 +0.0 +0.2 -0.4 -0.4 -0.8
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -0.3 +0.5 -0.4 -0.2 -0.8
phage P. phyto PHYTO2 MOI 1 +0.1 +0.3 -0.2 -0.9 -0.5
phage 36hr PHYTO9 MOI 0.1 -0.2 +0.4 -0.5 -0.4 -0.6
phage 24hr PHYTO10 MOI 1 -0.1 +0.4 -0.5 -0.2 -0.7
phage 36hr PHYTO11 MOI 0.1 +0.1 +0.8 -0.5 -0.3 -1.2
phage 36hr PHYTO6 MOI 1 -0.1 +0.3 -0.7 +0.2 -0.7
nophagecontrol 36hr Phyto Lib only -0.0 +0.4 -0.6 +0.3 -0.7
phage 36hr PHYTO8 MOI 0.1 +0.1 +0.8 -0.3 -0.2 -1.0
phage 36hr PHYTO4 MOI 1 -0.2 +0.7 -0.1 -0.0 -0.9
stress Dimethyl Sulfoxide 6 vol% +0.1 -1.1 -0.0 +0.3 +0.3
phage 24hr PHYTO2 MOI 1 -0.0 +0.7 -0.1 +0.3 -1.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +0.4 -0.3 -0.1 -0.6
phage 24hr PHYTO3 MOI 1 +0.0 +0.3 -0.2 +0.4 -0.8
phage 24hr PHYTO3 MOI 10 -0.3 +0.8 -0.1 -0.2 -0.4
phage 24hr PHYTO1 MOI 10 -0.1 +0.8 -0.4 -0.5 +0.1
phage 36hr PHYTO3 MOI 1 -0.1 +0.8 -0.6 +0.5 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 +0.7 +0.4 -0.3 -0.5
phage 36hr PHYTO11 MOI 1 -0.2 +0.4 -0.3 -0.3 +0.6
carbon source D-Glucose (C) -0.2 +0.9 -0.3 +0.4 -0.4
phage 36hr PHYTO8 MOI 10 -0.1 +0.8 -0.3 +0.6 -0.4
phage 36hr PHYTO8 MOI 10 +0.1 +1.0 -0.3 +0.4 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +1.3 +0.1 -0.3 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +1.0 -0.6 -0.2 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +1.1 -0.2 -0.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +1.2 -0.4 +0.1 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.7 +1.0 -0.4 -0.3 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 +1.5 -0.5 -0.7 +0.5
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BPHYT_RS09775
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BPHYT_RS09780
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