Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS09740 and BPHYT_RS09745 are separated by 3 nucleotidesBPHYT_RS09745 and BPHYT_RS09750 overlap by 4 nucleotidesBPHYT_RS09750 and BPHYT_RS09755 are separated by 79 nucleotidesBPHYT_RS09755 and BPHYT_RS09760 are separated by 129 nucleotides BPHYT_RS09740: BPHYT_RS09740 - glycosyl transferase, at 2,208,841 to 2,210,019 _RS09740 BPHYT_RS09745: BPHYT_RS09745 - glucose-6-phosphate isomerase, at 2,210,023 to 2,211,504 _RS09745 BPHYT_RS09750: BPHYT_RS09750 - glycosyl transferase, at 2,211,501 to 2,212,730 _RS09750 BPHYT_RS09755: BPHYT_RS09755 - glycosyl transferase family 1, at 2,212,810 to 2,213,976 _RS09755 BPHYT_RS09760: BPHYT_RS09760 - GDP-D-mannose dehydratase, at 2,214,106 to 2,215,149 _RS09760
Group Condition BPHYT_RS09740 BPHYT_RS09745 BPHYT_RS09750 BPHYT_RS09755 BPHYT_RS09760
phage 36hr PHYTO11 MOI 1 +0.0 +0.2 -0.2 -3.3 N.D.
phage 24hr PHYTO7 MOI 10 -0.3 -0.1 +0.4 -3.2 N.D.
phage P. phyto corn MOI 1 -0.6 -0.1 -0.0 -2.2 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.3 -0.1 -2.1 N.D.
carbon source succinate (C) +0.2 -0.3 -0.1 -2.2 N.D.
phage 36hr PHYTO1 MOI 10 +0.1 -0.2 -0.1 -2.2 N.D.
phage 36hr PHYTO10 MOI 1 -0.1 -0.3 -0.0 -1.9 N.D.
phage 24hr PHYTO9 MOI 0.1 -0.2 -0.5 -0.4 -1.2 N.D.
phage 24hr PHYTO6 MOI 1 -0.3 -0.7 +0.3 -1.3 N.D.
carbon source D,L-Lactate (C) +0.1 +0.0 -0.2 -1.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.1 +0.1 +0.6 -2.1 N.D.
carbon source Azelaic (C) +0.1 -0.5 +0.1 -1.2 N.D.
nophagecontrol 36hr Phyto Lib only -0.0 -0.1 +0.3 -1.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 -0.1 +1.0 -2.1 N.D.
phage 36hr PHYTO4 MOI 1 -0.2 +0.1 +0.2 -1.4 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.3 -0.5 +0.2 -1.2 N.D.
phage 24hr PHYTO3 MOI 1 -0.3 -0.1 +0.5 -1.0 N.D.
phage 24hr PHYTO1 MOI 10 -0.0 +0.2 +0.5 -1.2 N.D.
phage 24hr PHYTO11 MOI 1 -0.8 +0.3 +0.7 -0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 -0.9 -0.2 +0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.5 -0.8 +1.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 +0.2 -0.5 +0.9 N.D.
phage 36hr PHYTO7 MOI 1 -0.1 -0.4 +0.4 +1.3 N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +0.6 +0.1 -0.3 +1.0 N.D.
phage 36hr PHYTO2 MOI 1 -0.4 +0.1 +0.4 +1.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.3 -0.1 +0.7 +1.0 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.2 +0.9 +0.3 +0.7 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +0.2 +0.2 +0.7 +1.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 -0.1 +0.2 +2.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 +1.2 +1.0 +0.6 N.D.
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