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Protein
Homologs
Fitness for 5 genes in
Burkholderia phytofirmans PsJN
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BPHYT_RS09515 and BPHYT_RS09520 are separated by 331 nucleotides
BPHYT_RS09520 and BPHYT_RS09525 overlap by 11 nucleotides
BPHYT_RS09525 and BPHYT_RS09530 are separated by 75 nucleotides
BPHYT_RS09530 and BPHYT_RS09535 are separated by 11 nucleotides
BPHYT_RS09515: BPHYT_RS09515 - phosphoribosylformylglycinamidine synthase, at 2,157,020 to 2,161,105
_RS09515
BPHYT_RS09520: BPHYT_RS09520 - XRE family transcriptional regulator, at 2,161,437 to 2,161,721
_RS09520
BPHYT_RS09525: BPHYT_RS09525 - toxin HipA, at 2,161,711 to 2,163,003
_RS09525
BPHYT_RS09530: BPHYT_RS09530 - peptidyl-prolyl cis-trans isomerase, at 2,163,079 to 2,163,858
_RS09530
BPHYT_RS09535: BPHYT_RS09535 - BolA family transcriptional regulator, at 2,163,870 to 2,164,190
_RS09535
Group
Condition
BPHYT
_RS09515
BPHYT
_RS09520
BPHYT
_RS09525
BPHYT
_RS09530
BPHYT
_RS09535
carbon source
L-Proline (C)
-5.9
N.D.
-0.8
N.D.
-0.2
nitrogen source
Ammonium chloride (N)
-5.5
N.D.
-0.6
N.D.
-0.7
carbon source
Sebacic (C)
-5.6
N.D.
-0.2
N.D.
-0.8
carbon source
Sebacic (C)
-5.3
N.D.
-0.1
N.D.
-1.0
carbon source
D-Mannose (C)
-5.8
N.D.
-0.3
N.D.
-0.3
carbon source
D-Gluconic Acid (C)
-6.5
N.D.
+0.1
N.D.
+0.1
nitrogen source
Uridine (N)
-5.6
N.D.
-0.5
N.D.
-0.3
carbon source
L-Tryptophan (C)
-6.2
N.D.
-0.1
N.D.
+0.1
carbon source
Suberic (C)
-5.5
N.D.
-0.2
N.D.
-0.5
nitrogen source
L-Asparagine (N)
-5.9
N.D.
+0.2
N.D.
-0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-4.7
N.D.
-0.9
N.D.
-0.6
nitrogen source
L-Proline (N)
-5.6
N.D.
-0.0
N.D.
-0.5
carbon source
Protocatechuic Acid (C)
-5.5
N.D.
+0.1
N.D.
-0.7
carbon source
D-Lactate (C)
-6.4
N.D.
+0.2
N.D.
+0.2
carbon source
Putrescine (C)
-5.8
N.D.
-0.2
N.D.
-0.1
carbon source
Disodium Glutarate (C)
-5.5
N.D.
+0.1
N.D.
-0.7
carbon source
L-Glutamine (C)
-6.0
N.D.
+0.1
N.D.
-0.1
carbon source
L-Malic (C)
-5.9
N.D.
+0.1
N.D.
-0.1
carbon source
D-Fructose (C)
-6.3
N.D.
+0.4
N.D.
-0.1
carbon source
D-Sorbitol (C)
-6.0
N.D.
-0.1
N.D.
+0.2
carbon source
Tween 20 (C)
-6.1
N.D.
-0.3
N.D.
+0.5
nutrient
casaminos
-5.7
N.D.
-0.6
N.D.
+0.4
nitrogen source
L-Glutamic (N)
-5.7
N.D.
-0.3
N.D.
+0.2
nitrogen source
L-Phenylalanine (N)
-5.5
N.D.
+0.4
N.D.
-0.5
carbon source
Azelaic (C)
-5.8
N.D.
+0.4
N.D.
-0.1
carbon source
D-Galactose (C)
-5.8
N.D.
+0.1
N.D.
+0.2
nitrogen source
L-Citrulline (N)
-5.5
N.D.
+0.3
N.D.
-0.3
nitrogen source
L-Lysine (N)
-5.7
N.D.
+1.0
N.D.
-0.7
carbon source
L-Histidine (C)
-5.9
N.D.
+0.2
N.D.
+0.3
nitrogen source
NAG (N)
-5.2
N.D.
+0.8
N.D.
-0.3
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