Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS09435 and BPHYT_RS09440 are separated by 62 nucleotidesBPHYT_RS09440 and BPHYT_RS09445 are separated by 583 nucleotidesBPHYT_RS09445 and BPHYT_RS09450 are separated by 191 nucleotidesBPHYT_RS09450 and BPHYT_RS09455 are separated by 183 nucleotides BPHYT_RS09435: BPHYT_RS09435 - MarR family transcriptional regulator, at 2,138,216 to 2,138,665 _RS09435 BPHYT_RS09440: BPHYT_RS09440 - glycerate kinase, at 2,138,728 to 2,139,873 _RS09440 BPHYT_RS09445: BPHYT_RS09445 - trigger factor, at 2,140,457 to 2,141,803 _RS09445 BPHYT_RS09450: BPHYT_RS09450 - ATP-dependent Clp protease proteolytic subunit 2, at 2,141,995 to 2,142,648 _RS09450 BPHYT_RS09455: BPHYT_RS09455 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 2,142,832 to 2,144,103 _RS09455
Group Condition BPHYT_RS09435 BPHYT_RS09440 BPHYT_RS09445 BPHYT_RS09450 BPHYT_RS09455
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.4 -1.6 -1.1 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.2 -1.3 -1.4 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.6 -0.5 -1.3 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -0.6 -1.0 N.D. N.D.
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.1 -0.8 -1.2 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.4 -0.7 -1.0 N.D. N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +0.2 -1.1 -1.0 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 +0.2 -1.2 N.D. N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.6 -1.9 +0.9 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.4 -1.0 -0.8 N.D. N.D.
nitrogen source L-Serine (N) -1.4 -0.4 +0.4 N.D. N.D.
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -1.5 +0.7 -0.2 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.6 +0.8 -1.2 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +0.7 -0.6 -1.1 N.D. N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +0.7 -0.9 -0.7 N.D. N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.1 -1.5 +0.9 N.D. N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.7 -1.4 +2.1 N.D. N.D.
phage 24hr PHYTO MOI 0.1 -1.0 +0.9 +0.5 N.D. N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.4 -1.7 +2.1 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.3 +0.5 -0.9 N.D. N.D.
nophagecontrol 36hr Phyto Lib only -0.4 +0.5 +1.4 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +1.9 -0.2 N.D. N.D.
phage 24hr PHYTO11 MOI 0.1 +0.2 +0.5 +1.5 N.D. N.D.
phage 24hr PHYTO6 MOI 10 +0.2 +1.0 +0.9 N.D. N.D.
carbon source Gly-Glu (C) +2.4 -0.2 -0.0 N.D. N.D.
phage 36hr PHYTO1 MOI 10 +0.6 +0.9 +0.8 N.D. N.D.
phage 36hr PHYTO11 MOI 0.1 +0.4 +0.7 +1.1 N.D. N.D.
phage 24hr PHYTO2 MOI 0.1 +0.4 +0.7 +1.1 N.D. N.D.
phage 36hr PHYTO11 MOI 0.1 +0.7 +0.6 +1.3 N.D. N.D.
phage 36hr PHYTO4 MOI 1 +0.2 +1.2 +1.3 N.D. N.D.
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