Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS09365	BPHYT_RS09370	BPHYT_RS09375	BPHYT_RS09380	BPHYT_RS09385
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.0	-0.2	-0.2	N.D.	-4.5
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.3	+0.3	-1.5	N.D.	-3.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.4	+0.2	-0.2	N.D.	-4.2
nitrogen source	NAG (N)	-0.2	+0.2	-0.5	N.D.	-3.8
phage	24hr PHYTO1 MOI 10	-2.1	-0.1	-0.0	N.D.	-1.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.3	-0.6	N.D.	-2.6
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-1.1	+0.2	-1.1	N.D.	-1.8
carbon source	L-Histidine (C)	-0.0	-0.1	-1.3	N.D.	-2.2
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.1	-0.5	-0.0	N.D.	-2.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.5	-1.0	-0.1	N.D.	-1.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	-0.9	+0.1	N.D.	-2.5
nitrogen source	L-Alanine (N)	-0.2	-0.2	+0.1	N.D.	-2.6
carbon source	Sebacic (C)	-1.4	+0.1	-0.4	N.D.	-1.1
phage	36hr PHYTO1 MOI 1	-0.8	-0.0	-0.3	N.D.	-1.6
nitrogen source	L-Lysine (N)	-0.3	-0.4	+0.0	N.D.	-1.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	+0.3	-0.5	N.D.	-1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	-0.1	-0.2	N.D.	-2.2
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+1.1	-0.0	-2.2	N.D.	-1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	+0.5	-0.3	N.D.	-2.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.6	-0.1	-0.6	N.D.	-1.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.6	+0.1	-1.2	N.D.	-1.0
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.0	+0.8	-1.0	N.D.	-0.8
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.4	+0.3	-0.0	N.D.	-1.7
phage	24hr PHYTO3 MOI 1	+0.5	-0.4	+0.3	N.D.	-1.3
carbon source	Suberic (C)	-1.0	-0.2	-0.4	N.D.	+0.8
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.5	-0.5	-0.7	N.D.	+1.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+1.5	-0.2	-0.4	N.D.	-1.1
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	+0.8	+0.6	+0.1	N.D.	-1.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.8	+0.2	-0.1	N.D.	+1.6
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+2.3	+0.4	-0.4	N.D.	+1.8