Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS09330 and BPHYT_RS09335 are separated by 388 nucleotidesBPHYT_RS09335 and BPHYT_RS09340 are separated by 82 nucleotidesBPHYT_RS09340 and BPHYT_RS09345 are separated by 95 nucleotidesBPHYT_RS09345 and BPHYT_RS09350 are separated by 85 nucleotides BPHYT_RS09330: BPHYT_RS09330 - phytoene synthase, at 2,116,270 to 2,117,094 _RS09330 BPHYT_RS09335: BPHYT_RS09335 - tRNA-Leu, at 2,117,483 to 2,117,569 _RS09335 BPHYT_RS09340: BPHYT_RS09340 - hypothetical protein, at 2,117,652 to 2,118,299 _RS09340 BPHYT_RS09345: BPHYT_RS09345 - TetR family transcriptional regulator, at 2,118,395 to 2,119,009 _RS09345 BPHYT_RS09350: BPHYT_RS09350 - hydrolase, at 2,119,095 to 2,120,237 _RS09350
Group Condition BPHYT_RS09330 BPHYT_RS09335 BPHYT_RS09340 BPHYT_RS09345 BPHYT_RS09350
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -3.0 N.D. -0.2 -0.9 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.2 N.D. -0.4 -1.0 -0.4
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -2.7 N.D. -0.1 -0.7 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -2.6 N.D. +0.1 -0.7 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -2.8 N.D. +0.3 -0.7 +0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -3.0 N.D. -0.2 +0.4 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -2.7 N.D. -0.2 -0.3 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.6 N.D. +0.0 -0.5 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.6 N.D. +0.2 -0.5 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -2.1 N.D. +0.0 -1.1 +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -3.0 N.D. -0.1 -0.1 +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -2.2 N.D. +0.5 -0.4 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.1 N.D. +0.7 -0.9 +0.4
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -2.0 N.D. +0.2 +0.6 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.7 N.D. -0.1 +1.5 +0.3
phage 36hr PHYTO4 MOI 1 +2.1 N.D. -0.5 -0.6 -0.7
phage 24hr PHYTO6 MOI 0.1 +2.2 N.D. -0.2 -0.4 -0.4
phage 24hr PHYTO10 MOI 10 +1.9 N.D. -0.0 +0.2 -1.0
phage 24hr PHYTO3 MOI 10 +2.4 N.D. +0.1 -0.9 +0.0
phage 36hr PHYTO6 MOI 10 +2.0 N.D. -0.1 +0.7 -0.6
phage 24hr PHYTO6 MOI 10 +1.5 N.D. -0.8 +1.3 +0.1
phage 36hr PHYTO2 MOI 1 +2.0 N.D. -0.3 +0.9 -0.3
phage 24hr PHYTO9 MOI 10 +2.4 N.D. -0.3 +0.5 -0.1
nophagecontrol 24hr Phyto Lib Only +2.4 N.D. +0.2 +0.4 -0.4
phage 36hr PHYTO3 MOI 1 +2.7 N.D. -0.1 +0.6 -0.3
phage 24hr PHYTO6 MOI 1 +2.2 N.D. -0.4 +0.8 +0.4
nophagecontrol 36hr Phyto Lib only +2.0 N.D. -0.2 +0.6 +0.5
phage 24hr PHYTO11 MOI 1 +2.4 N.D. -0.0 +0.8 -0.0
phage 36hr PHYTO2 MOI 1 +2.1 N.D. -0.1 +1.2 -0.0
phage 36hr PHYTO11 MOI 1 +2.0 N.D. -0.1 +1.1 +0.4
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