Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS09215 and BPHYT_RS09220 are separated by 40 nucleotidesBPHYT_RS09220 and BPHYT_RS09225 are separated by 39 nucleotidesBPHYT_RS09225 and BPHYT_RS09230 are separated by 177 nucleotidesBPHYT_RS09230 and BPHYT_RS09235 are separated by 353 nucleotides BPHYT_RS09215: BPHYT_RS09215 - ATP-dependent DNA ligase, at 2,085,683 to 2,088,505 _RS09215 BPHYT_RS09220: BPHYT_RS09220 - hypothetical protein, at 2,088,546 to 2,088,851 _RS09220 BPHYT_RS09225: BPHYT_RS09225 - LysR family transcriptional regulator, at 2,088,891 to 2,089,832 _RS09225 BPHYT_RS09230: BPHYT_RS09230 - NADPH:quinone reductase, at 2,090,010 to 2,091,032 _RS09230 BPHYT_RS09235: BPHYT_RS09235 - hypothetical protein, at 2,091,386 to 2,091,943 _RS09235
Group Condition BPHYT_RS09215 BPHYT_RS09220 BPHYT_RS09225 BPHYT_RS09230 BPHYT_RS09235
phage 24hr PHYTO1 MOI 10 -0.0 N.D. -0.7 -1.2 -0.4
phage 24hr PHYTO11 MOI 0.1 -0.0 N.D. -1.7 -0.0 -0.3
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.0 N.D. -1.0 -0.3 -0.6
supernatant control Vogels_fungal_media; pH 5.5 -0.1 N.D. -0.8 -1.1 +0.1
phage 24hr PHYTO9 MOI 10 -0.1 N.D. -0.1 -1.1 -0.4
lb_dap plate control LB_DAP agar plate, outgrowth in LB -0.0 N.D. -0.4 -0.7 -0.4
phage 36hr PHYTO6 MOI 1 +0.0 N.D. -0.2 -1.1 -0.2
nitrogen source L-Lysine (N) +0.1 N.D. -0.2 -1.0 -0.2
phage 24hr PHYTO10 MOI 1 +0.1 N.D. -0.9 -0.3 -0.3
phage 36hr PHYTO10 MOI 10 +0.1 N.D. -0.4 -0.3 -0.7
phage 36hr PHYTO11 MOI 0.1 -0.1 N.D. -0.8 -0.7 +0.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 N.D. -0.5 -0.1 -0.9
phage 24hr PHYTO4 MOI 10 -0.3 N.D. -0.7 -0.5 +0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 N.D. -0.8 -0.3 -0.2
phage 24hr PHYTO2 MOI 1 +0.1 N.D. -1.2 -0.3 +0.4
phage 36hr PHYTO4 MOI 1 +0.1 N.D. +0.2 -1.0 -0.2
phage 36hr PHYTO2 MOI 1 +0.2 N.D. -0.6 -0.8 +0.5
nitrogen source L-Serine (N) +0.2 N.D. +0.3 -0.9 -0.2
phage 24hr PHYTO10 MOI 10 +0.1 N.D. +0.3 -0.6 -0.4
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 N.D. +0.4 +0.2 -0.9
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.0 N.D. -0.9 +0.5 +0.2
nitrogen source L-Alanine (N) +0.2 N.D. -0.4 -0.4 +0.6
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.1 N.D. +0.3 +0.4 -0.7
phage 24hr PHYTO6 MOI 10 +0.2 N.D. -0.4 +0.1 +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 N.D. -0.5 +1.4 -0.0
nitrogen source L-Proline (N) +0.1 N.D. +0.4 -0.3 +0.9
nitrogen source L-Isoleucine (N) +0.2 N.D. +0.6 -0.2 +0.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.0 N.D. +0.6 +0.5 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 N.D. -0.2 +0.2 +1.5
nitrogen source Carnitine Hydrochloride (N) +0.1 N.D. +0.9 +0.3 +0.5
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BPHYT_RS09215
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BPHYT_RS09220
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