Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS09020 and BPHYT_RS09025 are separated by 294 nucleotidesBPHYT_RS09025 and BPHYT_RS09030 are separated by 235 nucleotidesBPHYT_RS09030 and BPHYT_RS09035 are separated by 15 nucleotidesBPHYT_RS09035 and BPHYT_RS09040 overlap by 4 nucleotides BPHYT_RS09020: BPHYT_RS09020 - UDP phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase, at 2,040,900 to 2,042,657 _RS09020 BPHYT_RS09025: BPHYT_RS09025 - 50S ribosomal protein L31 type B, at 2,042,952 to 2,043,218 _RS09025 BPHYT_RS09030: BPHYT_RS09030 - membrane protein, at 2,043,454 to 2,044,290 _RS09030 BPHYT_RS09035: BPHYT_RS09035 - MFS transporter, at 2,044,306 to 2,045,862 _RS09035 BPHYT_RS09040: BPHYT_RS09040 - MerR family transcriptional regulator, at 2,045,859 to 2,046,410 _RS09040
Group Condition BPHYT_RS09020 BPHYT_RS09025 BPHYT_RS09030 BPHYT_RS09035 BPHYT_RS09040
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB N.D. N.D. -0.6 -0.6 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. -0.2 -0.4 -0.6
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent N.D. N.D. -0.4 +0.4 -1.1
phage 36hr PHYTO1 MOI 1 N.D. N.D. +0.3 -0.4 -1.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. -0.7 +0.1 -0.4
phage 24hr PHYTO6 MOI 10 N.D. N.D. +0.1 +0.2 -1.1
phage 36hr PHYTO9 MOI 1 N.D. N.D. +0.2 +0.1 -1.0
phage 36hr PHYTO2 MOI 1 N.D. N.D. +0.4 +0.2 -1.1
phage 36hr PHYTO1 MOI 10 N.D. N.D. +0.6 +0.1 -0.9
vitamin With vitamins t2 N.D. N.D. -0.4 -0.3 +0.6
carbon source L-Fucose (C) N.D. N.D. -0.5 +0.1 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. -0.6 +0.1 +0.6
carbon source Suberic (C) N.D. N.D. -0.4 +0.7 -0.1
phage 24hr PHYTO9 MOI 0.1 N.D. N.D. +0.9 -0.3 -0.3
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. +0.5 +0.4 -0.5
phage 24hr PHYTO1 MOI 10 N.D. N.D. +0.7 +0.2 -0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X N.D. N.D. +0.1 -0.2 +0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.7 +0.4 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +1.0 -0.1 +0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. N.D. +0.5 +0.2 +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.6 +0.0 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.5 +0.1 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.5 +0.1 +0.7
phage 24hr PHYTO1 MOI 10 N.D. N.D. +0.5 +0.3 +0.5
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. N.D. +0.4 -0.0 +1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.6 +0.2 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +1.1 +0.2 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +1.0 +0.2 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.8 +0.2 +0.9
phage 24hr PHYTO3 MOI 10 N.D. N.D. +0.4 +0.3 +1.2
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