Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS09000 and BPHYT_RS09005 are separated by 322 nucleotidesBPHYT_RS09005 and BPHYT_RS09010 overlap by 49 nucleotidesBPHYT_RS09010 and BPHYT_RS09015 are separated by 330 nucleotidesBPHYT_RS09015 and BPHYT_RS09020 are separated by 2 nucleotides BPHYT_RS09000: BPHYT_RS09000 - competence protein ComE, at 2,037,370 to 2,037,960 _RS09000 BPHYT_RS09005: BPHYT_RS09005 - MerR family transcriptional regulator, at 2,038,283 to 2,038,777 _RS09005 BPHYT_RS09010: BPHYT_RS09010 - 4-carboxymuconolactone decarboxylase, at 2,038,729 to 2,039,187 _RS09010 BPHYT_RS09015: BPHYT_RS09015 - multidrug transporter MatE, at 2,039,518 to 2,040,897 _RS09015 BPHYT_RS09020: BPHYT_RS09020 - UDP phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase, at 2,040,900 to 2,042,657 _RS09020
Group Condition BPHYT_RS09000 BPHYT_RS09005 BPHYT_RS09010 BPHYT_RS09015 BPHYT_RS09020
phage P. phyto PHYTO2 MOI 1 -3.3 -0.1 -0.1 -0.0 N.D.
phage 36hr PHYTO4 MOI 1 -3.1 +0.2 -0.5 -0.1 N.D.
phage 36hr PHYTO10 MOI 1 -3.4 -0.1 +0.2 -0.1 N.D.
phage 24hr PHYTO4 MOI 0.1 -3.2 +0.2 +0.1 -0.2 N.D.
phage 36hr PHYTO6 MOI 0.1 -3.2 +0.4 +0.1 -0.0 N.D.
nophagecontrol 24hr Phyto Lib Only -1.8 +0.1 -0.9 -0.1 N.D.
phage 24hr PHYTO1 MOI 1 -1.9 -0.2 -0.4 -0.2 N.D.
phage 36hr PHYTO1 MOI 1 -1.9 -0.0 -0.7 +0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.3 -0.6 -0.5 -0.2 N.D.
phage 36hr PHYTO10 MOI 10 -1.6 -0.1 -0.7 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -2.7 -0.2 +0.5 -0.1 N.D.
phage 24hr PHYTO MOI 0.1 -1.7 -0.2 -0.3 -0.2 N.D.
phage 24hr PHYTO11 MOI 1 -1.6 -0.5 -0.3 +0.1 N.D.
nophagecontrol 36hr Phyto Lib only -1.6 -0.3 -0.2 -0.2 N.D.
phage 36hr PHYTO11 MOI 1 -1.8 -0.2 -0.3 +0.0 N.D.
phage 24hr PHYTO11 MOI 0.1 -1.5 -0.4 -0.3 +0.1 N.D.
nitrogen source L-Serine (N) -1.5 +0.1 -0.7 -0.0 N.D.
phage 24hr PHYTO10 MOI 10 -1.8 +0.2 -0.5 -0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.8 +0.3 -0.5 +0.2 N.D.
phage 36hr PHYTO11 MOI 1 -1.8 +0.2 -0.3 +0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.9 -0.3 +0.7 -0.1 N.D.
phage 36hr PHYTO9 MOI 0.1 -1.8 +0.2 +0.3 -0.2 N.D.
phage 24hr PHYTO2 MOI 0.1 -1.7 +0.2 +0.3 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.8 +0.0 +0.5 -0.1 N.D.
stress Paraquat dichloride 0.064 mg/ml -1.1 +0.5 -0.4 +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.4 +0.6 +0.2 +0.1 N.D.
carbon source Suberic (C) +1.6 +0.0 -1.0 -0.0 N.D.
phage 24hr PHYTO9 MOI 10 +1.8 -0.1 -1.0 -0.1 N.D.
carbon source Phenylacetic 5 mM (C) +1.8 +0.2 -0.6 -0.2 N.D.
carbon source succinate (C) +2.0 +0.2 -0.2 -0.2 N.D.
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