Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS08995 and BPHYT_RS09000 are separated by 219 nucleotidesBPHYT_RS09000 and BPHYT_RS09005 are separated by 322 nucleotidesBPHYT_RS09005 and BPHYT_RS09010 overlap by 49 nucleotidesBPHYT_RS09010 and BPHYT_RS09015 are separated by 330 nucleotides BPHYT_RS08995: BPHYT_RS08995 - hypothetical protein, at 2,036,722 to 2,037,150 _RS08995 BPHYT_RS09000: BPHYT_RS09000 - competence protein ComE, at 2,037,370 to 2,037,960 _RS09000 BPHYT_RS09005: BPHYT_RS09005 - MerR family transcriptional regulator, at 2,038,283 to 2,038,777 _RS09005 BPHYT_RS09010: BPHYT_RS09010 - 4-carboxymuconolactone decarboxylase, at 2,038,729 to 2,039,187 _RS09010 BPHYT_RS09015: BPHYT_RS09015 - multidrug transporter MatE, at 2,039,518 to 2,040,897 _RS09015
Group Condition BPHYT_RS08995 BPHYT_RS09000 BPHYT_RS09005 BPHYT_RS09010 BPHYT_RS09015
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB -3.9 -0.2 -0.2 +0.0 -0.7
phage 24hr PHYTO11 MOI 1 -2.1 -1.6 -0.5 -0.3 +0.1
phage P. phyto PHYTO2 MOI 1 -0.7 -3.3 -0.1 -0.1 -0.0
phage 36hr PHYTO1 MOI 1 -1.4 -1.9 -0.0 -0.7 +0.0
phage 24hr PHYTO MOI 0.1 -1.4 -1.7 -0.2 -0.3 -0.2
phage 24hr PHYTO4 MOI 0.1 -0.4 -3.2 +0.2 +0.1 -0.2
phage 24hr PHYTO10 MOI 10 -1.4 -1.8 +0.2 -0.5 -0.0
nophagecontrol 24hr Phyto Lib Only -0.5 -1.8 +0.1 -0.9 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.4 -0.4 -0.4 -0.1 +0.1
nophagecontrol 24hr Phyto Lib only -1.2 -1.7 -0.1 -0.1 +0.1
carbon source D-Galacturonic Acid (C) -2.1 -0.7 +0.1 -0.2 -0.1
phage 24hr PHYTO2 MOI 0.1 -1.4 -1.7 +0.2 +0.3 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.1 -2.7 -0.2 +0.5 -0.1
phage 36hr PHYTO10 MOI 1 +1.1 -3.4 -0.1 +0.2 -0.1
phage 24hr PHYTO1 MOI 1 +0.4 -1.9 -0.2 -0.4 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.7 -1.4 +0.6 +0.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4 -1.9 -0.3 +0.7 -0.1
phage 36hr PHYTO6 MOI 0.1 +1.1 -3.2 +0.4 +0.1 -0.0
carbon source Suberic (C) -2.1 +1.6 +0.0 -1.0 -0.0
phage 36hr PHYTO4 MOI 1 +2.0 -3.1 +0.2 -0.5 -0.1
phage 36hr PHYTO11 MOI 1 +1.1 -1.8 -0.2 -0.3 +0.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -1.3 +0.5 -0.5 +0.4 -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.7 +0.7 -0.1 +0.6 +0.0
phage 36hr PHYTO9 MOI 0.1 +1.1 -1.8 +0.2 +0.3 -0.2
carbon source Malonic (C) -2.1 +1.6 +0.1 -0.2 +0.3
carbon source Disodium Glutarate (C) -1.2 +1.4 -0.0 -0.3 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.3 -1.8 +0.0 +0.5 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +2.4 -0.5 -0.6 -0.1 -0.4
phage 24hr PHYTO9 MOI 10 +0.4 +1.8 -0.1 -1.0 -0.1
phage 36hr PHYTO7 MOI 0.1 +1.9 +0.9 +0.2 +0.1 -0.2
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BPHYT_RS09000
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