Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS08880 and BPHYT_RS08885 overlap by 1 nucleotidesBPHYT_RS08885 and BPHYT_RS08890 are separated by 58 nucleotidesBPHYT_RS08890 and BPHYT_RS08895 are separated by 340 nucleotidesBPHYT_RS08895 and BPHYT_RS08900 are separated by 207 nucleotides BPHYT_RS08880: BPHYT_RS08880 - phosphate transport regulator, at 2,010,016 to 2,010,642 _RS08880 BPHYT_RS08885: BPHYT_RS08885 - inorganic phosphate transporter, at 2,010,642 to 2,011,652 _RS08885 BPHYT_RS08890: BPHYT_RS08890 - 3-oxoacyl-ACP reductase, at 2,011,711 to 2,012,517 _RS08890 BPHYT_RS08895: BPHYT_RS08895 - glycoside hydrolase, at 2,012,858 to 2,014,114 _RS08895 BPHYT_RS08900: BPHYT_RS08900 - phosphate starvation protein PhoH, at 2,014,322 to 2,016,172 _RS08900
Group Condition BPHYT_RS08880 BPHYT_RS08885 BPHYT_RS08890 BPHYT_RS08895 BPHYT_RS08900
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -1.7 -1.1 -0.3 +0.2 +0.2
carbon source Phenylacetic 5 mM (C) -1.0 -0.6 -0.2 +0.0 -0.9
vitamin With vitamins t2 -0.7 -1.2 +0.1 -0.2 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.8 -0.8 -0.5 -0.2 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.1 -1.4 -0.1 +0.5 -0.0
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.8 -0.3 -0.0 -0.3 -0.8
nutrient Min media with glucose -1.1 -0.9 +0.2 +0.2 -0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -1.0 -0.9 +0.0 +0.1 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 -1.1 +0.0 +0.2 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0 -1.3 -0.0 +0.5 +0.0
carbon source Tween 20 (C) -1.2 -0.6 -0.1 -0.1 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 -1.0 -0.1 +0.2 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -1.1 -0.1 +0.4 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 -0.9 -0.3 +0.7 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -0.7 -0.4 +0.7 +0.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +0.1 +0.4 +0.4 -0.6 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.9 -0.4 +0.0 +0.6 +0.4
phage 36hr PHYTO8 MOI 10 +0.6 +0.7 +0.2 -0.2 +0.4
phage 36hr PHYTO8 MOI 0.1 +0.7 +0.8 +0.3 -0.2 +0.2
phage 36hr PHYTO4 MOI 0.1 +0.4 +0.9 +0.4 -0.2 +0.2
phage 24hr PHYTO9 MOI 0.1 +0.6 +0.7 +0.3 -0.1 +0.4
phage 24hr PHYTO3 MOI 10 +0.7 +1.0 -0.3 -0.2 +0.7
phage 24hr PHYTO9 MOI 10 +1.0 +0.7 -0.1 -0.1 +0.4
phage PHYTO3 MOI 0.1 +1.2 +0.8 +0.3 -0.3 -0.1
phage 36hr PHYTO8 MOI 10 +0.7 +0.4 +0.3 -0.1 +0.7
phage 36hr PHYTO2 MOI 0.1 +0.9 +0.3 +0.1 +0.3 +0.4
phage 36hr PHYTO2 MOI 1 +1.1 +0.6 +0.2 +0.1 +0.1
phage 24hr PHYTO11 MOI 1 +0.7 +0.8 +0.5 +0.1 +0.2
phage 36hr PHYTO4 MOI 1 +0.6 +1.0 +0.4 -0.1 +0.5
phage 24hr PHYTO6 MOI 10 +0.9 +0.7 +0.4 +0.1 +0.6
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