Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS08765 and BPHYT_RS08770 are separated by 309 nucleotidesBPHYT_RS08770 and BPHYT_RS08775 are separated by 159 nucleotidesBPHYT_RS08775 and BPHYT_RS08780 are separated by 106 nucleotidesBPHYT_RS08780 and BPHYT_RS08785 are separated by 94 nucleotides BPHYT_RS08765: BPHYT_RS08765 - ABC transporter ATP-binding protein, at 1,988,224 to 1,989,138 _RS08765 BPHYT_RS08770: BPHYT_RS08770 - universal stress protein A, at 1,989,448 to 1,989,912 _RS08770 BPHYT_RS08775: BPHYT_RS08775 - membrane protein, at 1,990,072 to 1,990,734 _RS08775 BPHYT_RS08780: BPHYT_RS08780 - hypothetical protein, at 1,990,841 to 1,991,185 _RS08780 BPHYT_RS08785: BPHYT_RS08785 - LexA repressor, at 1,991,280 to 1,991,930 _RS08785
Group Condition BPHYT_RS08765 BPHYT_RS08770 BPHYT_RS08775 BPHYT_RS08780 BPHYT_RS08785
nitrogen source L-Glutamic (N) -4.2 -0.1 -0.5 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB -4.1 -0.1 +0.3 N.D. N.D.
phage 24hr PHYTO6 MOI 0.1 -3.7 -0.1 +0.1 N.D. N.D.
carbon source L-Fucose (C) -2.1 -1.2 -0.3 N.D. N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -1.9 -1.0 -0.6 N.D. N.D.
carbon source D-Glucose (C) -3.1 -0.4 +0.3 N.D. N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -2.6 -0.5 +0.0 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.5 -0.0 -0.2 N.D. N.D.
phage 24hr PHYTO6 MOI 0.1 -0.6 -1.1 -1.0 N.D. N.D.
phage PHYTO3 MOI 0.1 -0.7 -1.0 -1.0 N.D. N.D.
motility outer cut, LB soft agar motility assay -2.4 -0.0 -0.1 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.5 -0.7 -0.3 N.D. N.D.
phage P. phyto PHYTO2 MOI 0.1 -1.7 -0.0 -0.8 N.D. N.D.
carbon source adipate (C) -0.6 -1.2 -0.6 N.D. N.D.
motility outer cut, LB soft agar motility assay -2.0 +0.6 -1.1 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.1 -1.0 -0.4 N.D. N.D.
nitrogen source L-Isoleucine (N) -2.0 +0.2 -0.3 N.D. N.D.
carbon source succinate (C) -1.9 +0.3 -0.4 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.0 -0.2 +0.4 N.D. N.D.
phage P. phyto PHYTO2 MOI 1 -2.4 +0.4 +0.4 N.D. N.D.
phage 24hr PHYTO7 MOI 10 +0.6 -0.6 -1.6 N.D. N.D.
phage 36hr PHYTO8 MOI 10 -1.2 +0.7 -0.6 N.D. N.D.
phage 24hr PHYTO4 MOI 10 +0.8 +0.5 -1.9 N.D. N.D.
phage 36hr PHYTO8 MOI 10 +0.7 +0.4 -1.6 N.D. N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) +1.9 -2.5 +0.2 N.D. N.D.
carbon source Protocatechuic Acid (C) +1.4 -1.2 -0.1 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.6 +0.6 -0.7 N.D. N.D.
carbon source Malonic (C) +2.3 -0.3 +0.0 N.D. N.D.
carbon source Sebacic (C) +2.2 +0.2 +0.0 N.D. N.D.
vitamin With vitamins t1 +1.6 +1.0 +0.2 N.D. N.D.
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