Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS08605	BPHYT_RS08610	BPHYT_RS08615	BPHYT_RS08620	BPHYT_RS08625
carbon source	2-Deoxy-D-ribonic lithium salt (C)	N.D.	+0.0	-2.6	-0.2	N.D.
nitrogen source	L-Alanine (N)	N.D.	+0.1	-2.3	+0.0	N.D.
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	N.D.	+0.2	-2.3	+0.4	N.D.
carbon source	Malonic (C)	N.D.	+0.2	-1.5	-0.3	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	+0.2	-1.6	+0.0	N.D.
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	N.D.	+0.2	-1.6	+0.2	N.D.
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	N.D.	+0.4	-1.2	-0.1	N.D.
nitrogen source	L-Lysine (N)	N.D.	+0.3	-1.3	+0.2	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.4	-0.7	-0.4	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	-1.0	+0.5	-0.1	N.D.
phage	36hr PHYTO4 MOI 1	N.D.	-0.5	+0.8	-0.5	N.D.
motility	inner cut, LB soft agar motility assay	N.D.	-0.7	+1.1	-0.0	N.D.
phage	24hr PHYTO9 MOI 10	N.D.	+0.6	+0.5	-0.4	N.D.
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.5	+0.8	+0.3	N.D.
nitrogen source	L-Glutamic (N)	N.D.	+0.2	+1.1	-0.2	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.0	+1.8	-0.6	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.1	+1.3	+0.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.0	+1.3	+0.2	N.D.
stress	Paraquat dichloride 0.032 mg/ml	N.D.	+0.2	+1.2	+0.2	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.1	+1.8	-0.3	N.D.
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	+0.3	+1.6	-0.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.2	+1.4	+0.0	N.D.
stress	Paraquat dichloride 0.064 mg/ml	N.D.	+0.2	+1.5	+0.1	N.D.
carbon source	Malonic (C)	N.D.	+0.4	+1.3	-0.0	N.D.
phage	24hr PHYTO3 MOI 10	N.D.	+0.4	+1.2	+0.2	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.0	+1.7	+0.4	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.2	+1.9	-0.0	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.0	+1.7	+0.4	N.D.
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	N.D.	+0.3	+2.2	-0.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.9	+1.3	+0.1	N.D.