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Cofit
Protein
Homologs
Fitness for 5 genes in
Burkholderia phytofirmans PsJN
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BPHYT_RS08555 and BPHYT_RS08560 are separated by 113 nucleotides
BPHYT_RS08560 and BPHYT_RS08565 are separated by 205 nucleotides
BPHYT_RS08565 and BPHYT_RS08570 are separated by 134 nucleotides
BPHYT_RS08570 and BPHYT_RS08575 are separated by 117 nucleotides
BPHYT_RS08555: BPHYT_RS08555 - ABC transporter permease, at 1,956,189 to 1,956,848
_RS08555
BPHYT_RS08560: BPHYT_RS08560 - cysteine ABC transporter substrate-binding protein, at 1,956,962 to 1,957,756
_RS08560
BPHYT_RS08565: BPHYT_RS08565 - dihydroorotate dehydrogenase, at 1,957,962 to 1,958,984
_RS08565
BPHYT_RS08570: BPHYT_RS08570 - arginyl-tRNA-protein transferase, at 1,959,119 to 1,959,940
_RS08570
BPHYT_RS08575: BPHYT_RS08575 - leucyl/phenylalanyl-tRNA--protein transferase, at 1,960,058 to 1,960,795
_RS08575
Group
Condition
BPHYT
_RS08555
BPHYT
_RS08560
BPHYT
_RS08565
BPHYT
_RS08570
BPHYT
_RS08575
carbon source
m-Inositol (C)
-0.1
-0.5
-4.2
-0.0
-0.2
carbon source
Tween 20 (C)
-0.4
-0.2
-3.6
-0.1
-0.2
carbon source
Trisodium citrate (C)
-0.0
+0.2
-4.3
-0.2
-0.1
carbon source
D-Glucosamine Hydrochloride (C)
-0.0
+0.1
-4.2
-0.4
+0.2
carbon source
Gly-Glu (C)
+0.0
+0.0
-4.1
-0.5
+0.2
nutrient
L-Serine
-0.1
+0.2
-3.8
-0.4
-0.2
carbon source
L-Histidine (C)
-0.1
-0.2
-3.7
-0.3
-0.1
carbon source
D-Sorbitol (C)
-0.1
-0.2
-3.8
-0.1
-0.0
carbon source
L-Fucose (C)
+0.1
-0.0
-4.1
-0.2
-0.1
carbon source
L-Arginine (C)
-0.0
+0.1
-4.4
+0.0
-0.0
carbon source
Disodium Glutarate (C)
-0.2
+0.1
-4.0
-0.3
+0.2
carbon source
NAG (C)
-0.1
-0.2
-3.8
-0.3
+0.1
in planta
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
+0.3
-0.4
-2.8
-0.4
-0.8
carbon source
D-Glucose (C)
-0.4
+0.2
-3.5
-0.1
-0.3
carbon source
Sebacic (C)
-0.1
+0.3
-3.7
-0.6
-0.0
nutrient
L-Serine
+0.0
+0.1
-3.7
-0.5
+0.0
carbon source
Dodecandioic (C)
-0.2
+0.3
-3.7
-0.2
-0.2
nutrient
L-Histidine
-0.0
+0.2
-3.7
-0.2
-0.3
carbon source
Suberic (C)
-0.5
+0.2
-3.5
-0.0
-0.2
carbon source
Xylitol (C)
-0.0
+0.3
-4.2
+0.1
-0.1
carbon source
Azelaic (C)
-0.2
+0.4
-3.7
-0.2
-0.2
carbon source
D-Galacturonic Acid (C)
+0.0
-0.3
-3.6
-0.2
+0.3
carbon source
Deoxyribonucleic from herring sperm 10 mg/mL (C)
-0.3
+0.3
-2.6
-0.6
-0.5
carbon source
L-Glutamine (C)
-0.2
-0.3
-3.5
+0.8
-0.3
carbon source
succinate (C)
-0.2
+0.0
-3.6
+0.2
+0.3
carbon source
Protocatechuic Acid (C)
-0.0
+0.4
-3.5
+0.1
-0.3
carbon source
propionate (C)
-0.2
+0.1
-3.6
+0.3
+0.1
carbon source
2-Deoxyadenosine 5-monophosphate 5 mM (C)
+0.0
+0.6
-2.7
-0.4
-0.8
carbon source
Disodium Glutarate (C)
-0.1
+0.4
-3.7
-0.1
+0.5
nutrient
L-Histidine
+0.3
+0.2
-3.6
+0.1
+0.2
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BPHYT_RS08565
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