Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS08480 and BPHYT_RS08485 are separated by 207 nucleotidesBPHYT_RS08485 and BPHYT_RS08490 are separated by 36 nucleotidesBPHYT_RS08490 and BPHYT_RS08495 are separated by 629 nucleotidesBPHYT_RS08495 and BPHYT_RS08500 are separated by 40 nucleotides BPHYT_RS08480: BPHYT_RS08480 - transcriptional regulator, at 1,939,323 to 1,939,745 _RS08480 BPHYT_RS08485: BPHYT_RS08485 - undecaprenyl-phosphate glucose phosphotransferase, at 1,939,953 to 1,941,350 _RS08485 BPHYT_RS08490: BPHYT_RS08490 - Crp/Fnr family transcriptional regulator, at 1,941,387 to 1,942,121 _RS08490 BPHYT_RS08495: BPHYT_RS08495 - beta-mannosidase, at 1,942,751 to 1,945,399 _RS08495 BPHYT_RS08500: BPHYT_RS08500 - hypothetical protein, at 1,945,440 to 1,946,522 _RS08500
Group Condition BPHYT_RS08480 BPHYT_RS08485 BPHYT_RS08490 BPHYT_RS08495 BPHYT_RS08500
phage 24hr PHYTO2 MOI 0.1 N.D. -0.7 -1.7 -0.1 -0.1
phage 24hr PHYTO3 MOI 1 N.D. -0.6 -1.4 -0.4 -0.2
phage 36hr PHYTO10 MOI 1 N.D. -0.3 -1.7 -0.4 +0.0
phage 36hr PHYTO11 MOI 1 N.D. +0.1 -2.0 -0.3 -0.1
phage 36hr PHYTO2 MOI 1 N.D. -0.4 -1.8 -0.0 +0.1
phage PHYTO3 MOI 0.1 N.D. +0.0 -1.7 -0.2 -0.2
nophagecontrol 36hr Phyto Lib Only N.D. +0.1 -1.9 +0.0 +0.1
phage 36hr PHYTO2 MOI 0.1 N.D. -0.2 -1.1 -0.5 +0.1
nophagecontrol 24hr Phyto Lib Only N.D. -0.3 -1.0 -0.5 +0.2
carbon source D-Glucose (C) N.D. +0.2 -1.3 -0.1 -0.1
phage P. phyto PHYTO2 MOI 1 N.D. +0.1 -1.0 -0.6 +0.2
phage 36hr PHYTO4 MOI 1 N.D. +0.3 -1.1 -0.3 +0.0
phage 36hr PHYTO9 MOI 1 N.D. -0.3 -0.9 -0.2 +0.4
phage 24hr PHYTO10 MOI 1 N.D. +0.8 -1.3 -0.4 -0.1
phage 24hr PHYTO6 MOI 0.1 N.D. -0.2 -1.2 +0.3 +0.2
phage 24hr PHYTO1 MOI 10 N.D. +0.4 -1.4 +0.0 +0.2
phage 24hr PHYTO3 MOI 10 N.D. -0.2 -0.8 -0.2 +0.6
phage P. phyto PHYTO2 MOI 0.1 N.D. -0.8 -0.5 -0.0 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.4 -0.8 +0.2 -0.3
phage 24hr PHYTO4 MOI 10 N.D. +0.9 -0.9 -0.1 +0.4
carbon source D-Xylose (C) N.D. -0.2 +1.4 -0.5 -0.3
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. +0.6 -0.6 +0.1 +0.6
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB N.D. +1.0 -0.9 +0.5 +0.6
carbon source Xylitol (C) N.D. -0.2 +1.6 -0.1 -0.1
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. +0.2 +1.5 -0.4 -0.1
carbon source Tween 20 (C) N.D. +0.8 +0.8 -0.2 -0.1
carbon source D-Gluconic Acid (C) N.D. +0.4 +0.8 -0.2 +0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB N.D. +0.7 +0.8 +0.3 +0.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X N.D. +0.4 +1.0 -0.0 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.7 +2.7 -0.3 -0.4
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