Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS08275	BPHYT_RS08280	BPHYT_RS08285	BPHYT_RS08290	BPHYT_RS08295
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.0	-2.7	N.D.	-0.3	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.0	-1.6	N.D.	-0.2	+0.2
phage	36hr PHYTO10 MOI 1	-0.3	-0.3	N.D.	-0.3	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-0.7	N.D.	+0.0	-0.3
phage	P. phyto PHYTO2 MOI 0.1	-0.4	-1.1	N.D.	+0.2	+0.0
phage	36hr PHYTO11 MOI 1	-0.4	-0.9	N.D.	+0.2	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.2	N.D.	-0.7	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.4	-0.4	N.D.	-0.1	-0.5
nitrogen source	L-Asparagine (N)	+0.0	-0.9	N.D.	-0.2	+0.4
nitrogen source	L-Lysine (N)	-0.0	-0.8	N.D.	-0.2	+0.5
temperature	LB 37C	-0.2	-0.8	N.D.	+0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.8	N.D.	-0.1	-0.6
carbon source	D-Glucose 20 mM (C)	+0.1	-0.7	N.D.	-0.1	+0.6
phage	36hr PHYTO8 MOI 10	-0.4	-0.7	N.D.	+0.2	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	+0.7	N.D.	-0.4	-0.1
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	-0.2	+0.2	N.D.	-0.4	+0.7
phage	36hr PHYTO11 MOI 1	-0.5	+0.2	N.D.	+0.1	+0.7
phage	36hr PHYTO7 MOI 0.1	-0.3	+0.7	N.D.	-0.1	+0.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.5	N.D.	+1.0	+0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.5	N.D.	+1.2	+0.5
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.2	-0.3	N.D.	+0.7	+0.5
phage	24hr PHYTO8 MOI 1	-0.0	+0.7	N.D.	-0.2	+0.6
phage	24hr PHYTO4 MOI 10	-0.2	+0.8	N.D.	+0.1	+0.6
phage	24hr PHYTO7 MOI 1	-0.1	+0.9	N.D.	+0.4	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	+0.3	N.D.	+0.4	+0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.3	N.D.	+0.1	+0.8
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.0	N.D.	+0.9	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.3	N.D.	+0.4	+1.4
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.2	+0.8	N.D.	+0.4	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.6	N.D.	+0.5	+1.0